Co-expression analysis

Gene ID	Contig6007_at
Gene name
Homology with Arabidopsis	Similar to At5g61412: unknown protein (HF=2e+1)
Module size	8 genes
NF	0.53
%ile	74.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.70	86.0	0.81	Contig6007_at	Contig6007	-	-	2e+1	At5g61412	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.84	Contig2302_at	Contig2302	-	-	1e-25	At5g60670	60S ribosomal protein L12 (RPL12C)	O.I.	H.G.	S.X.	Please select
0.56	74.3	0.85	HX05P09r_at	HX05P09r	-	-	9e-1	At5g60350	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.88	Contig15427_at	Contig15427	-	-	7e+0	At4g29110	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.87	Contig18135_at	Contig18135	-	-	2e+0	At5g67300	MYBR1 (MYB DOMAIN PROTEIN R1)	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.85	Contig15476_at	Contig15476	-	-	2e+0	At1g48325	Expressed protein	O.I.	H.G.	S.X.	Please select
0.41	53.9	0.85	Contig10370_at	Contig10370	-	-	2e-12	At1g34370	STOP1 (sensitive to proton rhizotoxicity 1)	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.86	HM10K10r_at	HM10K10r	-	-	2e-2	At3g10185	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
21.2	99.7	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
11.0	99.2	GSM68893	3 h salt stressed replicate 2	GSE3097	Barley1 salinity stress study
7.1	98.4	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.0	97.9	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.5	97.6	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.4	97.5	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
5.4	97.5	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
5.2	97.4	GSM68890	3 h control replicate 2	GSE3097	Barley1 salinity stress study
4.6	96.8	GSM146377	Maythorpe shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.5	96.7	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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