Co-expression analysis

Gene ID	Contig6006_s_at
Gene name
Homology with Arabidopsis	Similar to At1g60830: U2 snRNP auxiliary factor large subunit, putative (HF=3e+0)
Module size	6 genes
NF	0.78
%ile	96.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.82	Contig6006_s_at	Contig6006	-	-	3e+0	At1g60830	U2 snRNP auxiliary factor large subunit, putative	O.I.	H.G.	S.X.	Please select
0.91	98.1	0.82	Contig6005_x_at	Contig6005	-	-	3e-1	At1g20130	hydrolase, acting on ester bonds / lipase/ structural constituent of cell wall	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.84	Contig2041_at	Contig2041	-	-	1e+0	At3g61310	DNA-binding family protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.85	Contig2041_x_at	Contig2041	-	-	1e+0	At3g61310	DNA-binding family protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.82	Contig8898_at	Contig8898	-	-	2e-29	At2g25570	binding	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.83	Contig4406_x_at	Contig4406	-	-	2e+0	At4g25110	AtMC2 (metacaspase 2)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.3	99.6	GSM68893	3 h salt stressed replicate 2	GSE3097	Barley1 salinity stress study
8.8	98.9	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.9	98.7	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.8	98.6	GSM68892	3 h salt stressed replicate 1	GSE3097	Barley1 salinity stress study
7.4	98.5	GSM68903	27 h control replicate3	GSE3097	Barley1 salinity stress study
6.8	98.3	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.5	98.2	GSM68898	8 h salt stressed replicate 1	GSE3097	Barley1 salinity stress study
6.2	98.0	GSM68899	8 h salt stressed replicate 2	GSE3097	Barley1 salinity stress study
6.0	97.9	GSM68905	27 h salt stressed replicate 2	GSE3097	Barley1 salinity stress study
5.9	97.9	GSM68902	27 h control replicate 2	GSE3097	Barley1 salinity stress study

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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