Co-expression analysis

Gene ID Contig6006_s_at
Gene name
Homology with ArabidopsisSimilar to At1g60830: U2 snRNP auxiliary factor large subunit, putative (HF=3e+0)
Module size 6 genes
NF 0.78
%ile 96.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.82Contig6006_s_atContig6006--3e+0At1g60830U2 snRNP auxiliary factor large subunit, putativeO.I.H.G.S.X.
0.9198.10.82Contig6005_x_atContig6005--3e-1At1g20130hydrolase, acting on ester bonds / lipase/ structural constituent of cell wallO.I.H.G.S.X.
0.6784.70.84Contig2041_atContig2041--1e+0At3g61310DNA-binding family proteinO.I.H.G.S.X.
0.6784.70.85Contig2041_x_atContig2041--1e+0At3g61310DNA-binding family proteinO.I.H.G.S.X.
0.5066.90.82Contig8898_atContig8898--2e-29At2g25570bindingO.I.H.G.S.X.
0.4458.90.83Contig4406_x_atContig4406--2e+0At4g25110AtMC2 (metacaspase 2)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.399.6GSM688933 h salt stressed replicate 2GSE3097Barley1 salinity stress studyLink to GEO
8.898.9GSM238409Pericarp 4DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.998.7GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.898.6GSM688923 h salt stressed replicate 1GSE3097Barley1 salinity stress studyLink to GEO
7.498.5GSM6890327 h control replicate3GSE3097Barley1 salinity stress studyLink to GEO
6.898.3GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.598.2GSM688988 h salt stressed replicate 1GSE3097Barley1 salinity stress studyLink to GEO
6.298.0GSM688998 h salt stressed replicate 2GSE3097Barley1 salinity stress studyLink to GEO
6.097.9GSM6890527 h salt stressed replicate 2GSE3097Barley1 salinity stress studyLink to GEO
5.997.9GSM6890227 h control replicate 2GSE3097Barley1 salinity stress studyLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage