Co-expression analysis

Gene ID	Contig5994_s_at
Gene name
Homology with Arabidopsis	Similar to At5g56060: ATP binding / nucleotide binding / phenylalanine-tRNA ligase (HF=3e+0)
Module size	6 genes
NF	0.11
%ile	14.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	0.86	Contig5994_s_at	Contig5994	-	-	3e+0	At5g56060	ATP binding / nucleotide binding / phenylalanine-tRNA ligase	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.90	EBpi03_SQ003_J22_at	EBpi03_SQ003_J22	-	-	2e+0	At4g05100	AtMYB74 (myb domain protein 74)	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.91	Contig19802_at	Contig19802	-	-	3e+0	At5g59300	UBC7 (UBIQUITIN CARRIER PROTEIN 7)	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.93	Contig5927_at	Contig5927	-	-	1e-1	At1g22480	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.12	10.4	0.93	Contig3302_at	Contig3302	-	-	3e-1	At2g01100	unknown protein	O.I.	H.G.	S.X.	Please select
0.04	3.4	0.90	Contig2616_at	Contig2616	-	-	2e+0	At5g11990	proline-rich family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.4	98.5	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.4	98.5	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.0	97.2	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.2	96.3	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.2	96.3	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.2	96.3	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.0	96.0	GSM261069	Albina f-17 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.9	95.8	GSM261068	Albina f-17 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.8	95.7	GSM261043	before 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.6	95.3	GSM261074	Albina e-16 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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