Co-expression analysis

Gene ID	Contig5985_at
Gene name
Homology with Arabidopsis	Similar to At3g50590: nucleotide binding (HF=1e-3)
Module size	10 genes
NF	0.39
%ile	53.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.69	85.5	0.94	Contig5985_at	Contig5985	-	-	1e-3	At3g50590	nucleotide binding	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.95	HW09F23V_s_at	HW09F23V	-	-	3e+0	At4g10240	zinc finger (B-box type) family protein	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.95	Contig23513_at	Contig23513	-	-	7e+0	At5g49260	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.96	Contig6263_at	Contig6263	-	-	2e+0	At5g61640	PMSR1 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 1)	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.96	Contig3699_s_at	Contig3699	-	-	1e+0	At2g26060	emb1345 (embryo defective 1345)	O.I.	H.G.	S.X.	Please select
0.34	43.6	0.96	Contig11819_s_at	Contig11819	-	-	3e-3	At1g08320	bZIP family transcription factor	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.96	Contig10705_at	Contig10705	-	-	9e-13	At3g56850	AREB3 (ABA-RESPONSIVE ELEMENT BINDING PROTEIN 3)	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.96	Contig5586_at	Contig5586	-	-	2e-8	At1g48350	ribosomal protein L18 family protein	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.95	Contig4366_at	Contig4366	-	-	5e-16	At5g49810	MMT	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.96	Contig5696_at	Contig5696	-	-	7e-3	At5g48335	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
38.7	99.9	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.4	96.6	GSM372961	genotype: Mla6 - pathogen isolates: K1 - time: 8 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.1	96.2	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.9	95.8	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
3.8	95.7	GSM372969	genotype: Mla6 - pathogen isolates: K1 - time: 24 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.3	94.6	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.2	94.3	GSM382233	Root_Hg2	GSE15295	Mercury toxicity in barley roots
2.9	93.4	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.7	92.7	GSM311251	28-4_without_aphids_2	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
2.7	92.7	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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