Co-expression analysis

Gene ID Contig5985_at
Gene name
Homology with ArabidopsisSimilar to At3g50590: nucleotide binding (HF=1e-3)
Module size 10 genes
NF 0.39
%ile 53.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6985.50.94Contig5985_atContig5985--1e-3At3g50590nucleotide bindingO.I.H.G.S.X.
0.6077.30.95HW09F23V_s_atHW09F23V--3e+0At4g10240zinc finger (B-box type) family proteinO.I.H.G.S.X.
0.5369.70.95Contig23513_atContig23513--7e+0At5g49260unknown proteinO.I.H.G.S.X.
0.4053.10.96Contig6263_atContig6263--2e+0At5g61640PMSR1 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 1)O.I.H.G.S.X.
0.3849.50.96Contig3699_s_atContig3699--1e+0At2g26060emb1345 (embryo defective 1345)O.I.H.G.S.X.
0.3443.60.96Contig11819_s_atContig11819--3e-3At1g08320bZIP family transcription factorO.I.H.G.S.X.
0.3342.60.96Contig10705_atContig10705--9e-13At3g56850AREB3 (ABA-RESPONSIVE ELEMENT BINDING PROTEIN 3)O.I.H.G.S.X.
0.2630.40.96Contig5586_atContig5586--2e-8At1g48350ribosomal protein L18 family proteinO.I.H.G.S.X.
0.2427.20.95Contig4366_atContig4366--5e-16At5g49810MMTO.I.H.G.S.X.
0.2224.20.96Contig5696_atContig5696--7e-3At5g48335unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
38.799.9GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.496.6GSM372961genotype: Mla6 - pathogen isolates: K1 - time: 8 - rep3GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
4.196.2GSM238413Endosperm 4DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.995.8GSM382234Root_Hg3GSE15295Mercury toxicity in barley rootsLink to GEO
3.895.7GSM372969genotype: Mla6 - pathogen isolates: K1 - time: 24 - rep2GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
3.394.6GSM238418Endosperm 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.294.3GSM382233Root_Hg2GSE15295Mercury toxicity in barley rootsLink to GEO
2.993.4GSM261079Albina e-16 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.792.7GSM31125128-4_without_aphids_2GSE12584Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines Link to GEO
2.792.7GSM261076Albina e-16 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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