Co-expression analysis

Gene ID Contig5974_s_at
Gene name
Homology with ArabidopsisSimilar to At2g33380: RD20 (RESPONSIVE TO DESSICATION 20) (HF=1e+0)
Module size 6 genes
NF 0.35
%ile 48.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4458.90.89Contig5974_s_atContig5974--1e+0At2g33380RD20 (RESPONSIVE TO DESSICATION 20)O.I.H.G.S.X.
0.5572.00.91Contig17664_atContig17664--9e-5At5g05010clathrin adaptor complexes medium subunit-relatedO.I.H.G.S.X.
0.3849.50.90HV10C01u_x_atHV10C01u--5e-8At5g05110cysteine protease inhibitor, putative / cystatin, putativeO.I.H.G.S.X.
0.2732.10.91Contig13989_atContig13989--3e-12At5g39660CDF2 (CYCLING DOF FACTOR 2)O.I.H.G.S.X.
0.2528.90.91Contig197_s_atContig197--1e-24At5g59690histone H4O.I.H.G.S.X.
0.2122.60.90Contig6529_atContig6529--5e-8At3g12050Aha1 domain-containing proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.697.7GSM238421Endosperm 0 h; Seed germination Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.597.6GSM238420Endosperm 0 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.795.5GSM372957genotype: Mla6 - pathogen isolates: K1 - time: 0 - rep2GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
3.194.1GSM3634655 mM B(OH)3 treatment (5B) - rep3GSE14521Late response to boron toxicity in barley leavesLink to GEO
3.194.1GSM238424Endosperm 48 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.893.1GSM238423Endosperm 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.792.7GSM363461Control (C) - rep2GSE14521Late response to boron toxicity in barley leavesLink to GEO
2.692.3GSM1611487% SWC rep3GSE6990Barley drought stressLink to GEO
2.692.3GSM238422Endosperm 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.692.3GSM282033Malting_day4_Harrington_rep4GSE11200Expression data from malting barley seedsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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