Co-expression analysis

Gene ID Contig5969_at
Gene name
Homology with ArabidopsisSimilar to At1g64970: G-TMT (GAMMA-TOCOPHEROL METHYLTRANSFERASE) (HF=7e-4)
Module size 6 genes
NF 0.73
%ile 93.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.90Contig5969_atContig5969--7e-4At1g64970G-TMT (GAMMA-TOCOPHEROL METHYLTRANSFERASE)O.I.H.G.S.X.
0.6784.70.87Contig4324_atContig4324--8e+0At4g26060unknown proteinO.I.H.G.S.X.
0.6784.70.94Contig13318_atContig13318--1e-2At3g59010pectinesterase family proteinO.I.H.G.S.X.
0.6178.70.91Contig5966_atContig5966--9e-2At4g33360terpene cyclase/mutase-relatedO.I.H.G.S.X.
0.5066.90.91Contig5763_s_atContig5763C-8,7-sterol isomerase-2e+0At2g14890AGP9 (ARABINOGALACTAN PROTEIN 9)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.698.8GSM282031Malting_day1_Harrington_rep1GSE11200Expression data from malting barley seedsLink to GEO
5.097.2GSM282033Malting_day4_Harrington_rep4GSE11200Expression data from malting barley seedsLink to GEO
4.696.8GSM261026ABA-Early-rep3GSE10328ABA experimentLink to GEO
4.396.4GSM261023ABA-Control-rep3GSE10328ABA experimentLink to GEO
4.096.0GSM688893 h control replicate 1GSE3097Barley1 salinity stress studyLink to GEO
4.096.0GSM261043before 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.995.8GSM146369Golden Promise shoot Control, biological rep1GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.595.1GSM688913 h control replicate 3GSE3097Barley1 salinity stress studyLink to GEO
3.595.1GSM238436Embryo 48 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.595.1GSM261021ABA-Control-rep1GSE10328ABA experimentLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

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