Co-expression analysis

Gene ID Contig5966_at
Gene name
Homology with ArabidopsisSimilar to At4g33360: terpene cyclase/mutase-related (HF=9e-2)
Module size 6 genes
NF 0.63
%ile 85.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.91Contig5966_atContig5966--9e-2At4g33360terpene cyclase/mutase-relatedO.I.H.G.S.X.
0.6784.70.91Contig5969_atContig5969--7e-4At1g64970G-TMT (GAMMA-TOCOPHEROL METHYLTRANSFERASE)O.I.H.G.S.X.
0.6784.70.93Contig10453_atContig10453--9e-1At5g19485transferaseO.I.H.G.S.X.
0.5066.90.94Contig13318_atContig13318--1e-2At3g59010pectinesterase family proteinO.I.H.G.S.X.
0.4053.10.91EBpi01_SQ002_O15_atEBpi01_SQ002_O15--2e+0At5g47130Bax inhibitor-1 family / BI-1 familyO.I.H.G.S.X.
0.3849.50.89Contig5809_atContig5809--2e-14At1g58440XF1O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7790.80.90Contig2772_s_atContig2772--4e-50At5g49910CPHSC70-2EAT SHOCK PROTEIN 70-2 (CHLOROPLAST HEAT SHOCK PROTEIN 70-2)O.I.H.G.S.X.
0.6380.30.91Contig5763_s_atContig5763C-8,7-sterol isomerase-2e+0At2g14890AGP9 (ARABINOGALACTAN PROTEIN 9)O.I.H.G.S.X.
0.5572.00.83HE01D12u_atHE01D12u--9e+0At5g41640unknown proteinO.I.H.G.S.X.
0.5572.00.87Contig3552_atContig3552--7e-1At4g29273LCR23 (Low-molecular-weight cysteine-rich 23)O.I.H.G.S.X.
0.5572.00.90Contig11946_atContig11946--2e+0At1g49950DNA-binding protein, putativeO.I.H.G.S.X.
0.5369.70.87Contig4324_atContig4324--8e+0At4g26060unknown proteinO.I.H.G.S.X.
0.5066.90.69Contig14905_s_atContig14905--1e-4At1g15730PRLI-interacting factor L, putativeO.I.H.G.S.X.
0.4762.20.82Contig15600_atContig15600--2e+0At4g20760short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.4762.20.83Contig19684_atContig19684--3e-1At4g26730methyltransferaseO.I.H.G.S.X.
0.4661.00.87Contig4324_s_atContig4324--8e+0At4g26060unknown proteinO.I.H.G.S.X.
0.4661.00.89Contig5490_atContig5490--3e-1At3g14680CYP72A14O.I.H.G.S.X.
0.4053.10.80Contig9648_s_atContig9648--2e+0At5g37478-O.I.H.G.S.X.
0.4053.10.83HVSMEg0009E19r2_s_atHVSMEg0009E19r2--1e+1At5g05000TOC34 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 34)O.I.H.G.S.X.
0.4053.10.87Contig1343_atContig1343--2e-40At2g0125060S ribosomal protein L7 (RPL7B)O.I.H.G.S.X.
0.4053.10.88Contig5666_atContig5666--2e-6At3g29100VTI13O.I.H.G.S.X.
0.4053.10.90HW04C21u_atHW04C21u--5e+0At3g56230speckle-type POZ protein-relatedO.I.H.G.S.X.
0.3849.50.82Contig3554_atContig3554--6e-13At3g48890ATMP2O.I.H.G.S.X.
0.3647.10.80Contig3271_s_atContig3271--1e-6At5g38660APE1 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT)O.I.H.G.S.X.
0.3647.10.81Contig2769_s_atContig2769--2e+0At1g72610GER1 (GERMIN-LIKE PROTEIN 1)O.I.H.G.S.X.
0.3545.10.87Contig10484_atContig10484--6e-10At3g24650ABI3 (ABA INSENSITIVE 3)O.I.H.G.S.X.
0.3443.60.85Contig5531_atContig5531--6e-8At3g45640ATMPK3 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE 3)O.I.H.G.S.X.
0.3342.60.83Contig13415_atContig13415--1e+0At3g01513unknown proteinO.I.H.G.S.X.
0.3240.30.87Contig4445_atContig4445--3e-1At2g32190unknown proteinO.I.H.G.S.X.
0.3240.30.75Contig12945_atContig12945--8e-17At5g50400PAP27 (PURPLE ACID PHOSPHATASE 27)O.I.H.G.S.X.
0.3240.30.86Contig11254_atContig11254--3e+0At5g63085-O.I.H.G.S.X.
0.3138.60.78Contig11997_atContig11997--1e+0At4g19390-O.I.H.G.S.X.
0.2935.50.71Contig8898_atContig8898--2e-29At2g25570bindingO.I.H.G.S.X.
0.2935.50.88HV_CEb0001H12r2_atHV_CEb0001H12r2--4e+0At5g16740amino acid transporter family proteinO.I.H.G.S.X.
0.2835.50.86Contig23678_atContig23678--5e-1At3g12750ZIP1 (ZINC TRANSPORTER 1 PRECURSOR)O.I.H.G.S.X.
0.2732.10.89Contig6480_atContig6480--2e-1At1g53280DJ-1 family proteinO.I.H.G.S.X.
0.2732.10.86Contig25177_x_atContig25177--2e-20At1g29930CAB1 (CHLOROPHYLL A/B BINDING PROTEIN 1)O.I.H.G.S.X.
0.2630.40.84Contig19118_atContig19118--7e-6At5g50180protein kinase, putativeO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.597.6GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
5.297.4GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
4.796.9GSM238435Embryo 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.796.9GSM213441Barley seeds control in Hoagland solution for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
4.596.7GSM238436Embryo 48 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.296.3GSM146369Golden Promise shoot Control, biological rep1GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
4.196.2GSM261026ABA-Early-rep3GSE10328ABA experimentLink to GEO
4.096.0GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.795.5GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.695.3GSM688893 h control replicate 1GSE3097Barley1 salinity stress studyLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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