Co-expression analysis

Gene ID	Contig5966_at
Gene name
Homology with Arabidopsis	Similar to At4g33360: terpene cyclase/mutase-related (HF=9e-2)
Module size	6 genes
NF	0.63
%ile	85.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.91	Contig5966_at	Contig5966	-	-	9e-2	At4g33360	terpene cyclase/mutase-related	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.91	Contig5969_at	Contig5969	-	-	7e-4	At1g64970	G-TMT (GAMMA-TOCOPHEROL METHYLTRANSFERASE)	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.93	Contig10453_at	Contig10453	-	-	9e-1	At5g19485	transferase	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.94	Contig13318_at	Contig13318	-	-	1e-2	At3g59010	pectinesterase family protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.91	EBpi01_SQ002_O15_at	EBpi01_SQ002_O15	-	-	2e+0	At5g47130	Bax inhibitor-1 family / BI-1 family	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.89	Contig5809_at	Contig5809	-	-	2e-14	At1g58440	XF1	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.5	97.6	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.2	97.4	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.7	96.9	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.7	96.9	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
4.5	96.7	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.2	96.3	GSM146369	Golden Promise shoot Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.1	96.2	GSM261026	ABA-Early-rep3	GSE10328	ABA experiment
4.0	96.0	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.6	95.3	GSM68889	3 h control replicate 1	GSE3097	Barley1 salinity stress study

Inter-species module comparison

A co-expression module including the wheat gene, Ta.30743.1.S1_at, orthologous to the query gene, Contig5966_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	Ta.30743.1.S1_at	At4g33360	-	-	7e-1	At2g39990	EIF2	O.I.	H.G.	S.X.	Please select
0.64	83.6	Ta.28549.2.S1_a_at	At4g33360	ribosomal protein L7	-	9e-34	At2g44120	60S ribosomal protein L7 (RPL7C)	O.I.	H.G.	S.X.	Please select
0.61	82.0	Ta.28743.1.S1_at	At4g33360	-	-	5e-23	At3g49010	ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1)	O.I.	H.G.	S.X.	Please select
0.60	81.0	Ta.789.1.S1_a_at	At4g33360	elongation factor 1 beta'	-	7e-4	At5g19510	elongation factor 1B alpha-subunit 2 (eEF1Balpha2)	O.I.	H.G.	S.X.	Please select
0.56	78.6	Ta.30628.2.S1_x_at	At4g33360	Ribosomal protein L36	-	3e-36	At2g37600	60S ribosomal protein L36 (RPL36A)	O.I.	H.G.	S.X.	Please select
0.56	78.6	Ta.22849.1.S1_x_at	At4g33360	-	-	2e-68	At3g52580	40S ribosomal protein S14 (RPS14C)	O.I.	H.G.	S.X.	Please select
0.56	78.6	Ta.1289.3.S1_at	At4g33360	-	-	8e-34	At4g30800	40S ribosomal protein S11 (RPS11B)	O.I.	H.G.	S.X.	Please select
0.56	78.6	Ta.28291.2.S1_x_at	At4g33360	-	-	5e-42	At5g39740	60S ribosomal protein L5 (RPL5B)	O.I.	H.G.	S.X.	Please select
0.54	75.5	Ta.5670.1.S1_at	At4g33360	-	-	1e-17	At4g33250	EIF3K (EUKARYOTIC TRANSLATION INITIATION FACTOR 3K)	O.I.	H.G.	S.X.	Please select
0.50	72.4	Ta.7180.1.S1_x_at	At4g33360	-	-	3e-28	At3g13580	60S ribosomal protein L7 (RPL7D)	O.I.	H.G.	S.X.	Please select
0.50	72.4	Ta.27785.1.S1_a_at	At4g33360	-	-	4e-33	At5g59240	40S ribosomal protein S8 (RPS8B)	O.I.	H.G.	S.X.	Please select
0.49	69.7	Ta.22874.1.S1_x_at	At4g33360	-	-	1e-25	At3g61110	ARS27A (ARABIDOPSIS RIBOSOMAL PROTEIN S27)	O.I.	H.G.	S.X.	Please select
0.49	69.7	Ta.14445.1.A1_x_at	At4g33360	-	-	2e+1	At5g63065	-	O.I.	H.G.	S.X.	Please select
0.46	66.8	Ta.824.1.S1_a_at	At4g33360	Ribosomal protein L10A	-	8e-49	At5g22440	60S ribosomal protein L10A (RPL10aC)	O.I.	H.G.	S.X.	Please select
0.46	66.8	Ta.14419.1.S1_at	At4g33360	-	-	7e-71	At1g07770	RPS15A (ribosomal protein s15a)	O.I.	H.G.	S.X.	Please select
0.44	64.5	Ta.28710.1.S1_x_at	At4g33360	-	-	3e-14	At1g74270	60S ribosomal protein L35a (RPL35aC)	O.I.	H.G.	S.X.	Please select
0.44	64.5	Ta.15265.1.S1_at	At4g33360	-	-	3e-124	At1g43170	ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.43	62.2	Ta.24130.2.S1_x_at	At4g33360	60S ribosomal protein L15	-	6e-41	At4g17390	60S ribosomal protein L15 (RPL15B)	O.I.	H.G.	S.X.	Please select
0.42	60.9	Ta.28291.4.S1_x_at	At4g33360	-	-	1e-54	At3g25520	ATL5 (A. THALIANA RIBOSOMAL PROTEIN L5)	O.I.	H.G.	S.X.	Please select
0.40	58.4	Ta.28291.3.S1_x_at	At4g33360	-	-	1e-16	At3g25520	ATL5 (A. THALIANA RIBOSOMAL PROTEIN L5)	O.I.	H.G.	S.X.	Please select
0.40	58.4	Ta.28338.1.S1_at	At4g33360	-	-	1e-19	At5g46430	60S ribosomal protein L32 (RPL32B)	O.I.	H.G.	S.X.	Please select
0.39	56.1	Ta.27765.3.S1_at	At4g33360	Ribosomal protein L39	-	7e-15	At4g31985	60S ribosomal protein L39 (RPL39C)	O.I.	H.G.	S.X.	Please select
0.39	56.1	Ta.2739.4.S1_x_at	At4g33360	Ribosomal protein L19	-	3e-45	At3g16780	60S ribosomal protein L19 (RPL19B)	O.I.	H.G.	S.X.	Please select
0.38	54.7	Ta.966.1.S1_s_at	At4g33360	-	-	7e-22	At2g32060	40S ribosomal protein S12 (RPS12C)	O.I.	H.G.	S.X.	Please select
0.38	54.7	Ta.1289.3.S1_x_at	At4g33360	-	-	8e-34	At4g30800	40S ribosomal protein S11 (RPS11B)	O.I.	H.G.	S.X.	Please select
0.38	54.7	Ta.805.1.S1_at	At4g33360	-	-	9e-15	At3g05590	RPL18 (RIBOSOMAL PROTEIN L18)	O.I.	H.G.	S.X.	Please select
0.37	53.0	Ta.14635.2.S1_a_at	At4g33360	Ribosomal Pr 117	-	1e-75	At2g33370	60S ribosomal protein L23 (RPL23B)	O.I.	H.G.	S.X.	Please select
0.34	48.1	Ta.28308.1.S1_at	At4g33360	-	-	2e-15	At3g28900	60S ribosomal protein L34 (RPL34C)	O.I.	H.G.	S.X.	Please select
0.34	48.1	Ta.1335.2.S1_x_at	At4g33360	-	-	2e-86	At5g02960	40S ribosomal protein S23 (RPS23B)	O.I.	H.G.	S.X.	Please select
0.34	48.1	Ta.27765.2.S1_x_at	At4g33360	Ribosomal protein L39	-	6e-15	At4g31985	60S ribosomal protein L39 (RPL39C)	O.I.	H.G.	S.X.	Please select
0.33	46.9	Ta.2605.2.S1_at	At4g33360	-	-	1e-16	At3g47370	40S ribosomal protein S20 (RPS20B)	O.I.	H.G.	S.X.	Please select
0.31	42.7	Ta.22683.2.S1_at	At4g33360	-	-	1e-32	At4g00100	ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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