CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig5966_at

Gene name
Homology with Arabidopsis Similar to At4g33360: terpene cyclase/mutase-related (HF=9e-2)

Module size 6 genes

NF 0.63

%ile 85.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 0.91 Contig5966_at Contig5966 - - 9e-2 At4g33360 terpene cyclase/mutase-related O.I. H.G. S.X.
0.67 84.7 0.91 Contig5969_at Contig5969 - - 7e-4 At1g64970 G-TMT (GAMMA-TOCOPHEROL METHYLTRANSFERASE) O.I. H.G. S.X.
0.67 84.7 0.93 Contig10453_at Contig10453 - - 9e-1 At5g19485 transferase O.I. H.G. S.X.
0.50 66.9 0.94 Contig13318_at Contig13318 - - 1e-2 At3g59010 pectinesterase family protein O.I. H.G. S.X.
0.40 53.1 0.91 EBpi01_SQ002_O15_at EBpi01_SQ002_O15 - - 2e+0 At5g47130 Bax inhibitor-1 family / BI-1 family O.I. H.G. S.X.
0.38 49.5 0.89 Contig5809_at Contig5809 - - 2e-14 At1g58440 XF1 O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.5 97.6 GSM261045 after 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.2 97.4 GSM261047 after 3 days in mannitol medium rep3 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.7 96.9 GSM238435 Embryo 24 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
4.7 96.9 GSM213441 Barley seeds control in Hoagland solution for 12hr GSE8618 P. aeruginosa virulent factor to barley
4.5 96.7 GSM238436 Embryo 48 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.2 96.3 GSM146369 Golden Promise shoot Control, biological rep1 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.1 96.2 GSM261026 ABA-Early-rep3 GSE10328 ABA experiment
4.0 96.0 GSM238434 Embryo 24 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
3.7 95.5 GSM261046 after 3 days in mannitol medium rep2 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.6 95.3 GSM68889 3 h control replicate 1 GSE3097 Barley1 salinity stress study

Inter-species module comparison

A co-expression module including the rice gene, Os05g0104800, orthologous to the query gene, Contig5966_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.64 83.4 Os05g0104800 At4g33360 - Eukaryotic translation initiation factor 3 subunit5 (eIF-3 epsilon) (eIF3 p32 subunit) (eIF3f) 6e-4 At2g39990 EIF2 O.I. H.G. S.X.
0.69 87.9 Os04g0473400 At4g33360 - 60S ribosomal protein L6 2e-6 At1g74050 60S ribosomal protein L6 (RPL6C) O.I. H.G. S.X.
0.63 82.7 Os03g0341100 At4g33360 - 60S ribosomal protein L18 2e-12 At5g27850 60S ribosomal protein L18 (RPL18C) O.I. H.G. S.X.
0.62 81.5 Os01g0823300 At4g33360 - Ribosomal protein S26 2e-12 At2g40590 40S ribosomal protein S26 (RPS26B) O.I. H.G. S.X.
0.59 78.0 Os05g0350500 At4g33360 - Peptidase M24 family protein 2e-17 At3g51800 ATG2 O.I. H.G. S.X.
0.57 77.0 Os01g0100700 At4g33360 - 40S ribosomal protein S5-1 4e-26 At3g11940 ATRPS5A (RIBOSOMAL PROTEIN 5A) O.I. H.G. S.X.
0.57 77.0 Os01g0721900 At4g33360 - Hyaluronan/mRNA binding protein family protein 3e-6 At4g16830 nuclear RNA-binding protein (RGGA) O.I. H.G. S.X.
0.57 77.0 Os06g0562600 At4g33360 - T-complex protein 1, epsilon subunit(TCP-1-epsilon) (CCT-epsilon) (TCP-K36) 2e-88 At1g24510 T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative O.I. H.G. S.X.
0.56 76.3 Os08g0207000 At4g33360 - 40S ribosomal protein S11 (S18) (YS12) (RP41) 4e-60 At3g48930 EMB1080 (embryo defective 1080) O.I. H.G. S.X.
0.52 69.6 Os02g0686400 At4g33360 - Aspartyl-tRNA synthetase (EC 6.1.1.12)(Aspartate--tRNA ligase) (AspRS) 1e-6 At4g31180 aspartyl-tRNA synthetase, putative / aspartate--tRNA ligase, putative O.I. H.G. S.X.
0.50 68.0 Os03g0851000 At4g33360 - Transcription factor homolog BTF3-like protein 8e-12 At1g17880 nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative O.I. H.G. S.X.
0.41 52.4 Os02g0534800 At4g33360 - 40S ribosomal protein S14 (Clone MCH2) 3e-67 At3g11510 40S ribosomal protein S14 (RPS14B) O.I. H.G. S.X.
0.27 27.5 Os01g0752300 At4g33360 - 60S ribosomal protein L18a-1 1e-87 At2g34480 60S ribosomal protein L18A (RPL18aB) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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