Co-expression analysis

Gene ID Contig5966_at
Gene name
Homology with ArabidopsisSimilar to At4g33360: terpene cyclase/mutase-related (HF=9e-2)
Module size 6 genes
NF 0.63
%ile 85.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.91Contig5966_atContig5966--9e-2At4g33360terpene cyclase/mutase-relatedO.I.H.G.S.X.
0.6784.70.91Contig5969_atContig5969--7e-4At1g64970G-TMT (GAMMA-TOCOPHEROL METHYLTRANSFERASE)O.I.H.G.S.X.
0.6784.70.93Contig10453_atContig10453--9e-1At5g19485transferaseO.I.H.G.S.X.
0.5066.90.94Contig13318_atContig13318--1e-2At3g59010pectinesterase family proteinO.I.H.G.S.X.
0.4053.10.91EBpi01_SQ002_O15_atEBpi01_SQ002_O15--2e+0At5g47130Bax inhibitor-1 family / BI-1 familyO.I.H.G.S.X.
0.3849.50.89Contig5809_atContig5809--2e-14At1g58440XF1O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.597.6GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
5.297.4GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
4.796.9GSM238435Embryo 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.796.9GSM213441Barley seeds control in Hoagland solution for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
4.596.7GSM238436Embryo 48 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.296.3GSM146369Golden Promise shoot Control, biological rep1GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
4.196.2GSM261026ABA-Early-rep3GSE10328ABA experimentLink to GEO
4.096.0GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.795.5GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.695.3GSM688893 h control replicate 1GSE3097Barley1 salinity stress studyLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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