Co-expression analysis

Gene ID	Contig5960_at
Gene name
Homology with Arabidopsis	Similar to At3g18880: ribosomal protein S17 family protein (HF=1e-16)
Module size	6 genes
NF	0.46
%ile	63.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.96	Contig5960_at	Contig5960	-	-	1e-16	At3g18880	ribosomal protein S17 family protein	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.96	Contig11980_at	Contig11980	-	-	3e-2	At3g57920	SPL15 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 15)	O.I.	H.G.	S.X.	Please select
0.48	63.2	0.96	Contig10592_at	Contig10592	-	-	1e-2	At5g26180	NOL1/NOP2/sun family protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.96	Contig7886_at	Contig7886	-	-	8e+0	At5g39790	5'-AMP-activated protein kinase beta-1 subunit-related	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.96	Contig8742_at	Contig8742	-	-	1e-6	At3g61600	ATPOB1	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.96	Contig11977_at	Contig11977	-	-	6e-1	At5g62490	ATHVA22B	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.7	92.7	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.6	92.3	GSM160815	drought control rep3	GSE6990	Barley drought stress
2.6	92.3	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.6	92.3	GSM160822	38% SWC rep3	GSE6990	Barley drought stress
2.6	92.3	GSM419978	Awn_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
2.6	92.3	GSM440969	Control awn_Rep1	GSE17669	Gene expression in the barley spike during drought stress
2.6	92.3	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.5	91.9	GSM261024	ABA-Early-rep1	GSE10328	ABA experiment
2.5	91.9	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.5	91.9	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage