Co-expression analysis

Gene ID Contig5953_at
Gene name
Homology with ArabidopsisSimilar to At1g10470: ARR4 (RESPONSE REGULATOR 4) (HF=2e-10)
Module size 11 genes
NF 0.64
%ile 85.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7187.10.96Contig5953_atContig5953--2e-10At1g10470ARR4 (RESPONSE REGULATOR 4)O.I.H.G.S.X.
0.8092.50.96Contig4425_atContig4425--5e+0At5g14670ATARFA1B (ADP-ribosylation factor A1B)O.I.H.G.S.X.
0.7388.70.97Contig4593_atContig4593--9e-10At4g23650CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)O.I.H.G.S.X.
0.6279.10.97Contig4017_atContig4017--1e+0At2g16510vacuolar ATP synthase 16 kDa proteolipid subunit 5 / V-ATPase 16 kDa proteolipid subunit 5 (AVAP5)O.I.H.G.S.X.
0.6178.70.96Contig7364_atContig7364--5e-13At3g10330transcription initiation factor IIB-2 / general transcription factor TFIIB-2 (TFIIB2)O.I.H.G.S.X.
0.6178.70.97Contig2932_atContig2932--2e-4At5g21090leucine-rich repeat protein, putativeO.I.H.G.S.X.
0.6077.30.97Contig16444_atContig16444--4e+0At5g54980integral membrane family proteinO.I.H.G.S.X.
0.6077.30.97Contig22054_atContig22054--8e-2At2g02440unknown proteinO.I.H.G.S.X.
0.5369.70.97Contig22786_atContig22786--9e+0At5g36710unknown proteinO.I.H.G.S.X.
0.5268.30.97Contig25159_atContig25159--8e-12At2g35800mitochondrial substrate carrier family proteinO.I.H.G.S.X.
0.4661.00.97Contig20805_atContig20805--6e-1At1g47300F-box family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.899.3GSM238415Endosperm 8DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.998.7GSM238414Endosperm 8DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.898.6GSM419982Seed_Rep2GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
7.898.6GSM440976Control seed_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO
3.995.8GSM238417Endosperm 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.895.7GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.695.3GSM398262HS41-1_0d_rep2GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
3.695.3GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.595.1GSM238409Pericarp 4DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.294.3GSM398263HS41-1_0d_rep3GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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