Co-expression analysis

Gene ID Contig5949_s_at
Gene name
Homology with ArabidopsisSimilar to At4g14530: - (HF=2e+0)
Module size 6 genes
NF 0.55
%ile 76.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.89Contig5949_s_atContig5949--2e+0At4g14530-O.I.H.G.S.X.
0.8092.50.89Contig8149_atContig8149--6e+0At4g14225zinc finger (AN1-like) family proteinO.I.H.G.S.X.
0.5369.70.91Contig526_x_atContig526--2e+0At1g06530myosin heavy chain-relatedO.I.H.G.S.X.
0.5066.90.89Contig10268_atContig10268--3e-16At3g53130LUT1 (LUTEIN DEFICIENT 1)O.I.H.G.S.X.
0.4458.90.90Contig5452_atContig5452--9e-22At2g47250RNA helicase, putativeO.I.H.G.S.X.
0.2732.10.92Contig6089_atContig6089--2e-23At3g15610transducin family protein / WD-40 repeat family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.999.5GSM282038Malting_kilned_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
13.499.4GSM282040Malting_kilned_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
5.997.9GSM282041Control_dryseed_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
5.697.7GSM282025Control_dryseed_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
5.097.2GSM238432Embryo 0 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.796.9GSM282033Malting_day4_Harrington_rep4GSE11200Expression data from malting barley seedsLink to GEO
4.796.9GSM282032Malting_day1_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
4.696.8GSM238433Embryo 0 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.596.7GSM398265HS41-1_1d_rep2GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
4.296.3GSM238420Endosperm 0 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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