Co-expression analysis

Gene ID	Contig5933_at
Gene name
Homology with Arabidopsis	Similar to At5g35620: LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1) (HF=2e-6)
Module size	6 genes
NF	0.38
%ile	51.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	90.8	0.96	Contig5933_at	Contig5933	-	-	2e-6	At5g35620	LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1)	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.96	Contig13060_at	Contig13060	-	-	5e-10	At4g10060	catalytic/ glucosylceramidase	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.96	Contig10497_at	Contig10497	-	-	2e-1	At4g17720	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.96	Contig4415_at	Contig4415	-	-	3e-1	At2g18490	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.96	Contig24940_at	Contig24940	-	-	1e+0	At4g12000	-	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.96	Contig3633_s_at	Contig3633	-	-	7e-1	At3g13480	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.6	98.6	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
6.1	98.0	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
6.0	97.9	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.4	97.5	GSM213443	Barley seeds with P. aeruginosa PA5021 mutant for 12hr	GSE8618	P. aeruginosa virulent factor to barley
5.3	97.4	GSM213436	Barley seeds with P. aeruginosa PAO1 for 12hr	GSE8618	P. aeruginosa virulent factor to barley
5.0	97.2	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.0	97.2	GSM215728	gibberellin treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.2	96.3	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
3.3	94.6	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.3	94.6	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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