Co-expression analysis

Gene ID Contig5909_at
Gene name
Homology with ArabidopsisSimilar to At3g12250: TGA6 (TGACG MOTIF-BINDING FACTOR 6) (HF=4e-12)
Module size 19 genes
NF 0.74
%ile 93.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6279.10.91Contig5909_atContig5909--4e-12At3g12250TGA6 (TGACG MOTIF-BINDING FACTOR 6)O.I.H.G.S.X.
0.8995.40.93Contig3568_atContig3568iron/ascorbate-dependent oxidoreductase-7e-4At1g49390oxidoreductase, 2OG-Fe(II) oxygenase family proteinO.I.H.G.S.X.
0.8795.00.94Contig590_atContig590--1e+0At4g09840unknown proteinO.I.H.G.S.X.
0.8192.80.94Contig4061_atContig4061--2e-2At4g17670senescence-associated protein-relatedO.I.H.G.S.X.
0.7891.20.93Contig9239_s_atContig9239--3e-1At4g00330CRCK2O.I.H.G.S.X.
0.7891.20.94Contig4058_s_atContig4058--2e+0At5g42070unknown proteinO.I.H.G.S.X.
0.7891.20.94Contig3638_atContig3638--7e-9At5g21090leucine-rich repeat protein, putativeO.I.H.G.S.X.
0.7790.80.92Contig3567_atContig3567--1e-2At5g20550oxidoreductase, 2OG-Fe(II) oxygenase family proteinO.I.H.G.S.X.
0.7790.80.94Contig7366_s_atContig7366--3e-1At3g55450protein kinase, putativeO.I.H.G.S.X.
0.7689.80.93Contig6014_atContig6014--5e+0At5g38540jacalin lectin family proteinO.I.H.G.S.X.
0.7689.80.92HVSMEn0025K09r2_atHVSMEn0025K09r2--8e-1At2g21650MEE3 (MATERNAL EFFECT EMBRYO ARREST 3)O.I.H.G.S.X.
0.7388.70.92Contig7367_atContig7367--2e-3At1g66920serine/threonine protein kinase, putativeO.I.H.G.S.X.
0.7388.70.94Contig4999_atContig4999--6e-3At3g22750protein kinase, putativeO.I.H.G.S.X.
0.7086.00.95Contig13634_atContig13634--1e+0At4g33565protein binding / zinc ion bindingO.I.H.G.S.X.
0.6784.70.92HV09N10u_s_atHV09N10u--3e+0At1g05450protease inhibitor/seed storage/lipid transfer protein (LTP)-relatedO.I.H.G.S.X.
0.6784.70.93HVSMEn0022J01r2_atHVSMEn0022J01r2--6e-1At3g29370unknown proteinO.I.H.G.S.X.
0.6480.90.92Contig20198_atContig20198--3e-1At3g30775ERD5 (EARLY RESPONSIVE TO DEHYDRATION 5)O.I.H.G.S.X.
0.5975.80.94Contig5885_atContig5885--3e+0At4g02465unknown proteinO.I.H.G.S.X.
0.5674.30.93Contig9578_s_atContig9578--9e-13At5g64030dehydration-responsive protein-relatedO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.795.5GSM372955genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
3.394.6GSM398263HS41-1_0d_rep3GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
3.294.3GSM372991genotype: 11542 - pathogen isolates: 5874 - time: 32 - rep3GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
3.194.1GSM398261HS41-1_0d_rep1GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
3.194.1GSM372995genotype: 11542 - pathogen isolates: K1 - time: 8 - rep1GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
3.093.8GSM372945genotype: Mla6 - pathogen isolates: 5874 - time: 16 - rep2GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
3.093.8GSM398251Martin_0d_rep3GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
2.993.4GSM261041Dicktoo-deacclimation-rep3GSE10329Low temperature stress in cv. DicktooLink to GEO
2.893.1GSM372984genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
2.692.3GSM372988genotype: 11542 - pathogen isolates: 5874 - time: 24 - rep3GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage