Co-expression analysis

Gene ID Contig5907_at
Gene name
Homology with ArabidopsisSimilar to At5g06960: OBF5 (OCS-ELEMENT BINDING FACTOR 5) (HF=3e-9)
Module size 6 genes
NF 0.39
%ile 53.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6784.70.77Contig5907_atContig5907--3e-9At5g06960OBF5 (OCS-ELEMENT BINDING FACTOR 5)O.I.H.G.S.X.
0.4661.00.79HVSMEi0013F11r2_atHVSMEi0013F11r2--2e+0At3g44310NIT1O.I.H.G.S.X.
0.4356.40.73Contig9001_atContig9001--3e-3At4g08810SUB1O.I.H.G.S.X.
0.4356.40.73Contig9000_atContig9000--9e+0At2g21320zinc finger (B-box type) family proteinO.I.H.G.S.X.
0.4053.10.77Contig4994_atContig4994--4e-1At2g16060AHB1 (ARABIDOPSIS HEMOGLOBIN 1)O.I.H.G.S.X.
0.2021.10.73HV_CEa0006I19r2_atHV_CEa0006I19r2--2e-1At3g60961ATP binding / nucleobase, nucleoside, nucleotide kinaseO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
18.799.7GSM282040Malting_kilned_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
16.699.6GSM282038Malting_kilned_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
6.198.0GSM282029Malting_day1_Merit_rep3GSE11200Expression data from malting barley seedsLink to GEO
5.097.2GSM146375Maythorpe shoot Control, biological rep1GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
4.997.1GSM146380Maythorpe shoot Salt, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
4.496.6GSM282026Malting_day1_Legacy_rep4GSE11200Expression data from malting barley seedsLink to GEO
4.396.4GSM146369Golden Promise shoot Control, biological rep1GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
4.296.3GSM419983Seed_Rep3GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
4.296.3GSM440977Control seed_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
4.296.3GSM282028Malting_day1_Merit_rep1GSE11200Expression data from malting barley seedsLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os03g0318600, orthologous to the query gene, Contig5907_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6483.4Os03g0318600At5g06960-Transcription factor HBP-1b(c38)4e-15At5g06950AHBP-1BO.I.H.G.S.X.
0.8295.0Os06g0714200At5g06960-Calcium/calmodulin-dependent protein kinasehomolog|CaM kinase homolog|MCK1 protein8e-19At2g46700calcium-dependent protein kinase, putative / CDPK, putativeO.I.H.G.S.X.
0.7189.6Os01g0780500At5g06960-SCAMP family protein1e-14At2g20840secretory carrier membrane protein (SCAMP) family proteinO.I.H.G.S.X.
0.6787.2Os07g0592200At5g06960-Peptidase A1, pepsin family protein2e-11At5g43100aspartyl protease family proteinO.I.H.G.S.X.
0.6382.7Os09g0281700At5g06960-Ras-related protein RGP1 (GTP-binding regulatoryprotein RGP1)1e-17At5g47960ATRABA4CO.I.H.G.S.X.
0.5676.3Os04g0517400At5g06960-Conserved hypothetical protein5e-15At5g18480PGSIP6 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 6)O.I.H.G.S.X.
0.5068.0Os01g0338200At5g06960-Mov34/MPN/PAD-1 family protein1e+0At4g16144-O.I.H.G.S.X.
0.4458.1Os06g0188000At5g06960-Cyclic nucleotide-gated channel C (Fragment)1e-11At4g30360ATCNGC17O.I.H.G.S.X.
0.3948.3Os02g0822400At5g06960-No apical meristem (NAM) protein domain containingprotein5e-3At5g09330anac082 (Arabidopsis NAC domain containing protein 82)O.I.H.G.S.X.
0.3134.5Os01g0141100At5g06960-ATPase of the AAA+ class4e-52At2g27600SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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