Co-expression analysis

Gene ID	Contig5907_at
Gene name
Homology with Arabidopsis	Similar to At5g06960: OBF5 (OCS-ELEMENT BINDING FACTOR 5) (HF=3e-9)
Module size	6 genes
NF	0.39
%ile	53.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	0.77	Contig5907_at	Contig5907	-	-	3e-9	At5g06960	OBF5 (OCS-ELEMENT BINDING FACTOR 5)	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.79	HVSMEi0013F11r2_at	HVSMEi0013F11r2	-	-	2e+0	At3g44310	NIT1	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.73	Contig9001_at	Contig9001	-	-	3e-3	At4g08810	SUB1	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.73	Contig9000_at	Contig9000	-	-	9e+0	At2g21320	zinc finger (B-box type) family protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.77	Contig4994_at	Contig4994	-	-	4e-1	At2g16060	AHB1 (ARABIDOPSIS HEMOGLOBIN 1)	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.73	HV_CEa0006I19r2_at	HV_CEa0006I19r2	-	-	2e-1	At3g60961	ATP binding / nucleobase, nucleoside, nucleotide kinase	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
18.7	99.7	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
16.6	99.6	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
6.1	98.0	GSM282029	Malting_day1_Merit_rep3	GSE11200	Expression data from malting barley seeds
5.0	97.2	GSM146375	Maythorpe shoot Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.9	97.1	GSM146380	Maythorpe shoot Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.4	96.6	GSM282026	Malting_day1_Legacy_rep4	GSE11200	Expression data from malting barley seeds
4.3	96.4	GSM146369	Golden Promise shoot Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.2	96.3	GSM419983	Seed_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
4.2	96.3	GSM440977	Control seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
4.2	96.3	GSM282028	Malting_day1_Merit_rep1	GSE11200	Expression data from malting barley seeds

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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