Co-expression analysis

Gene ID Contig5893_at
Gene name
Homology with ArabidopsisSimilar to At1g04170: EIF2 GAMMA (HF=1e-52)
Module size 6 genes
NF 0.59
%ile 81.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.97Contig5893_atContig5893--1e-52At1g04170EIF2 GAMMAO.I.H.G.S.X.
0.6178.70.97Contig6751_atContig6751--1e+0At3g04990-O.I.H.G.S.X.
0.5572.00.97Contig8220_atContig8220--6e-1At1g33040NACA5 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 5)O.I.H.G.S.X.
0.5066.90.97Contig24940_atContig24940--1e+0At4g12000-O.I.H.G.S.X.
0.3849.50.97Contig3873_atContig3873--3e-20At1g01060LHY (LATE ELONGATED HYPOCOTYL)O.I.H.G.S.X.
0.3647.10.97HVSMEi0002I06r2_x_atHVSMEi0002I06r2--3e+0At3g02220unknown proteinO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6784.70.95Contig26554_atContig26554--9e-14At5g11510MYB3R-4 (myb domain protein 3R-4)O.I.H.G.S.X.
0.6784.70.97Contig7984_s_atContig7984--3e-1At5g65640bHLH093 (beta HLH protein 93)O.I.H.G.S.X.
0.6784.70.97Contig13538_atContig13538--2e+0At4g36430peroxidase, putativeO.I.H.G.S.X.
0.6077.30.96Contig5228_s_atContig5228--2e-17At1g10210ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1)O.I.H.G.S.X.
0.5572.00.96HT12D12r_s_atHT12D12r--7e-2At3g2850060S acidic ribosomal protein P2 (RPP2C)O.I.H.G.S.X.
0.5066.90.95Contig16119_atContig16119--8e+0Atcg01060-O.I.H.G.S.X.
0.5066.90.96Contig10738_atContig10738--2e+0At3g55790unknown proteinO.I.H.G.S.X.
0.5066.90.96Contig8687_atContig8687--2e-1At5g17740AAA-type ATPase family proteinO.I.H.G.S.X.
0.5066.90.96Contig9780_atContig9780--8e-8At5g11040-O.I.H.G.S.X.
0.5066.90.96Contig8195_atContig8195--4e-90At2g21790RNR1 (RIBONUCLEOTIDE REDUCTASE 1)O.I.H.G.S.X.
0.5066.90.97Contig660_s_atContig660--1e-37At1g09200histone H3O.I.H.G.S.X.
0.5066.90.97rbah36l17_s_atrbah36l17--7e-30At1g30580GTP bindingO.I.H.G.S.X.
0.5066.90.97Contig11440_s_atContig11440--1e+0At1g06475unknown proteinO.I.H.G.S.X.
0.5066.90.97Contig835_s_atContig835--4e-6At4g32260ATP synthase familyO.I.H.G.S.X.
0.4661.00.95Contig15191_atContig15191--2e+0At4g07932unknown proteinO.I.H.G.S.X.
0.4661.00.96rbags8a08_s_atrbags8a08--3e+0At5g47100CBL9O.I.H.G.S.X.
0.4661.00.96Contig18484_atContig18484--7e+0At5g64480unknown proteinO.I.H.G.S.X.
0.4458.90.94Contig11440_atContig11440--1e+0At1g06475unknown proteinO.I.H.G.S.X.
0.4458.90.96Contig19558_atContig19558--4e-1At5g42520ATBPC6O.I.H.G.S.X.
0.4458.90.96Contig18946_atContig18946--1e+0At5g65220ribosomal protein L29 family proteinO.I.H.G.S.X.
0.4458.90.97Contig14329_atContig14329--4e-4At1g04870PRMT10O.I.H.G.S.X.
0.4356.40.96Contig10669_atContig10669--4e-9At1g72330ALAAT2 (ALANINE AMINOTRANSFERASE 2)O.I.H.G.S.X.
0.4053.10.93Contig8719_atContig8719--4e-2At3g04990-O.I.H.G.S.X.
0.4053.10.94Contig13644_atContig13644--4e-1At2g18890protein kinase family proteinO.I.H.G.S.X.
0.4053.10.95HVSMEn0005G15f_x_atHVSMEn0005G15f--8e+0At4g10960UGE5 (UDP-D-glucose/UDP-D-galactose 4-epimerase 5)O.I.H.G.S.X.
0.4053.10.95Contig10507_atContig10507--2e+1At5g10990auxin-responsive family proteinO.I.H.G.S.X.
0.4053.10.96Contig9691_atContig9691--6e-3At4g36830GNS1/SUR4 membrane family proteinO.I.H.G.S.X.
0.4053.10.96Contig6467_atContig6467--7e+0At3g53020STV1 (SHORT VALVE1)O.I.H.G.S.X.
0.4053.10.96Contig10787_atContig10787--5e-5At4g27880seven in absentia (SINA) family proteinO.I.H.G.S.X.
0.4053.10.96Contig11574_atContig11574--6e-4At3g54110PUMP1 (PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1)O.I.H.G.S.X.
0.4053.10.97Contig18044_atContig18044--1e+0At3g47070unknown proteinO.I.H.G.S.X.
0.3849.50.96Contig5361_atContig5361--3e+0At4g29103unknown proteinO.I.H.G.S.X.
0.3849.50.95HY03D08u_atHY03D08u--3e-1At5g23030TET12 (TETRASPANIN12)O.I.H.G.S.X.
0.3849.50.95Contig12278_atContig12278--9e-1At5g26720unknown proteinO.I.H.G.S.X.
0.3849.50.96Contig20359_atContig20359--2e+0At4g26110NAP1O.I.H.G.S.X.
0.3647.10.94Contig8989_atContig8989--1e-1At5g49230HRB1 (HYPERSENSITIVE TO RED AND BLUE)O.I.H.G.S.X.
0.3647.10.95Contig6504_s_atContig6504--1e+0At1g32510anac011 (Arabidopsis NAC domain containing protein 11)O.I.H.G.S.X.
0.3647.10.96Contig6963_atContig6963--5e-11At5g02240binding / catalytic/ coenzyme bindingO.I.H.G.S.X.
0.3647.10.96Contig4849_s_atContig4849--1e-4At2g27600SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1)O.I.H.G.S.X.
0.3647.10.97Contig4603_atContig4603--3e+0At5g28630glycine-rich proteinO.I.H.G.S.X.
0.3647.10.97Contig8972_atContig8972--8e-10At3g47930ATGLDH (L-GALACTONO-1,4-LACTONE DEHYDOROGENASE)O.I.H.G.S.X.
0.3545.10.96Contig5347_atContig5347--1e-3At1g17770SUVH7 (SU(VAR)3-9 HOMOLOG 7)O.I.H.G.S.X.
0.3545.10.96EBma03_SQ003_G07_s_atEBma03_SQ003_G07--2e+0At3g30220unknown proteinO.I.H.G.S.X.
0.3443.60.95Contig6247_atContig6247--1e-42At1g07570APK1AO.I.H.G.S.X.
0.3342.60.95Contig19834_atContig19834--2e-1At5g17820peroxidase 57 (PER57) (P57) (PRXR10)O.I.H.G.S.X.
0.3342.60.95Contig5718_s_atContig5718--4e-3At1g49820ATMTK (ARABIDOPSIS THALIANA S-METHYL-5-THIORIBOSE KINASE)O.I.H.G.S.X.
0.3342.60.96Contig8973_atContig8973--5e-10At3g47930ATGLDH (L-GALACTONO-1,4-LACTONE DEHYDOROGENASE)O.I.H.G.S.X.
0.3342.60.96HM03E02u_atHM03E02u--2e+1At5g48945LCR46 (Low-molecular-weight cysteine-rich 46)O.I.H.G.S.X.
0.3342.60.96Contig4107_s_atContig4107--2e-1At1g14450unknown proteinO.I.H.G.S.X.
0.3342.60.96Contig17728_atContig17728--2e+0At3g21510AHP1 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 1)O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.096.0GSM238435Embryo 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.096.0GSM238431Embryo 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.096.0GSM213441Barley seeds control in Hoagland solution for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
3.595.1GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.993.4GSM372944genotype: Mla6 - pathogen isolates: 5874 - time: 16 - rep1GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
2.993.4GSM440960Stressed lemma_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
2.893.1GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.792.7GSM282037Malting_day1_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
2.792.7GSM282041Control_dryseed_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
2.792.7GSM282035Malting_day4_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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