Co-expression analysis

Gene ID Contig5877_at
Gene name
Homology with ArabidopsisSimilar to At5g02020: unknown protein (HF=6e-2)
Module size 8 genes
NF 0.43
%ile 60.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6178.70.83Contig5877_atContig5877--6e-2At5g02020unknown proteinO.I.H.G.S.X.
0.7891.20.87Contig16939_atContig16939--2e-10At5g55560protein kinase family proteinO.I.H.G.S.X.
0.4356.40.93HW02P01u_atHW02P01u--1e+0At5g63905unknown proteinO.I.H.G.S.X.
0.4053.10.94Contig11288_x_atContig11288--1e+0At5g15960KIN1O.I.H.G.S.X.
0.3849.50.94Contig15145_atContig15145--1e-61At3g09920PIP5K9 (PHOSPHATIDYL INOSITOL MONOPHOSPHATE 5 KINASE)O.I.H.G.S.X.
0.3545.10.90HW02P01u_x_atHW02P01u--1e+0At5g63905unknown proteinO.I.H.G.S.X.
0.3240.30.91Contig14080_atContig14080--4e-9At2g21120unknown proteinO.I.H.G.S.X.
0.2427.20.92Contig9426_atContig9426--2e-2At5g51340unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.798.6GSM215732gibberellin plus Yariv-reagent treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
6.097.9GSM215731gibberellin treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
5.497.5GSM215730Control (DMSO) treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
4.496.6GSM372981genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
4.096.0GSM431570pathogen isolates: Mock inoculated control - rep3GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
4.096.0GSM431550pathogen isolates: Polymyxa graminis - rep2GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
3.695.3GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.494.8GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.494.8GSM440974Stressed awn_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
3.494.8GSM431568pathogen isolates: Mock inoculated control - rep1GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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