Co-expression analysis

Gene ID Contig5865_at
Gene name
Homology with ArabidopsisSimilar to At5g04267: unknown protein (HF=2e+1)
Module size 9 genes
NF 0.41
%ile 57.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6480.90.95Contig5865_atContig5865--2e+1At5g04267unknown proteinO.I.H.G.S.X.
0.5369.70.96Contig4469_atContig4469--4e-63At1g14400UBC1 (UBIQUITIN CARRIER PROTEIN 1)O.I.H.G.S.X.
0.4356.40.96Contig1122_s_atContig1122--1e-22At1g07790HTB1O.I.H.G.S.X.
0.3849.50.96Contig9715_s_atContig9715--8e+0At4g35350XCP1 (XYLEM CYSTEINE PEPTIDASE 1)O.I.H.G.S.X.
0.3240.30.95Contig6456_s_atContig6456--4e+0At3g16120dynein light chain, putativeO.I.H.G.S.X.
0.3138.60.96Contig6438_s_atContig6438--6e-1At2g44581protein binding / zinc ion bindingO.I.H.G.S.X.
0.2935.50.95Contig370_atContig370--3e-23At5g60390elongation factor 1-alpha / EF-1-alphaO.I.H.G.S.X.
0.2732.10.96Contig4853_atContig4853--3e-17At2g39800P5CS1 (DELTA1-PYRROLINE-5-CARBOXYLATE SYNTHASE 1)O.I.H.G.S.X.
0.2630.40.96Contig19041_atContig19041--5e+0At4g22850-O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.098.7GSM238432Embryo 0 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.298.5GSM238433Embryo 0 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.198.0GSM261043before 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
5.997.9GSM261042before 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
4.796.9GSM261044before 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
4.696.8GSM238409Pericarp 4DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.196.2GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.096.0GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.394.6GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.194.1GSM382237Root_Control3GSE15295Mercury toxicity in barley rootsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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