CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig5857_at

Gene name
Homology with Arabidopsis Similar to At1g02965: unknown protein (HF=2e-1)

Module size 6 genes

NF 0.38

%ile 51.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.77 90.8 0.95 Contig5857_at Contig5857 - - 2e-1 At1g02965 unknown protein O.I. H.G. S.X.
0.60 77.3 0.95 Contig15213_at Contig15213 - - 1e-1 At4g27745 - O.I. H.G. S.X.
0.50 66.9 0.95 Contig12308_at Contig12308 - - 1e-5 At3g23530 cyclopropane fatty acid synthase, putative / CPA-FA synthase, putative O.I. H.G. S.X.
0.50 66.9 0.96 Contig10621_at Contig10621 - - 4e-1 At1g14315 - O.I. H.G. S.X.
0.19 19.6 0.95 Contig10520_s_at Contig10520 - - 3e-1 At4g39990 RABA4B (RAB GTPASE HOMOLOG A4B) O.I. H.G. S.X.
0.17 16.9 0.95 Contig6884_s_at Contig6884 - - 9e-5 At4g34100 protein binding / zinc ion binding O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	72.0	0.93	Contig12117_at	Contig12117	-	-	2e-10	At3g20780	ATTOP6B (topoisomerase 6 subunit B)	O.I.	H.G.	S.X.
0.50	66.9	0.95	Contig12944_at	Contig12944	-	-	2e-3	At1g44970	peroxidase, putative	O.I.	H.G.	S.X.
0.47	62.2	0.93	Contig3502_at	Contig3502	-	-	3e-1	At1g32610	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.
0.46	61.0	0.87	HX06L03r_at	HX06L03r	-	-	5e+0	At3g46613	RTFL4 (ROTUNDIFOLIA LIKE 4)	O.I.	H.G.	S.X.
0.43	56.4	0.95	Contig11632_at	Contig11632	-	-	4e-2	At2g37080	myosin heavy chain-related	O.I.	H.G.	S.X.
0.42	55.2	0.93	Contig7764_at	Contig7764	-	-	2e-31	At4g34450	coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative	O.I.	H.G.	S.X.
0.42	55.2	0.93	Contig6229_s_at	Contig6229	-	-	7e-7	At2g40930	UBP5 (UBIQUITIN-SPECIFIC PROTEASE 5)	O.I.	H.G.	S.X.
0.40	53.1	0.96	Contig17539_at	Contig17539	-	-	5e-41	At3g02460	plant adhesion molecule, putative	O.I.	H.G.	S.X.
0.36	47.1	0.92	Contig17810_at	Contig17810	-	-	2e-3	At1g24625	ZFP7 (ZINC FINGER PROTEIN 7)	O.I.	H.G.	S.X.
0.35	45.1	0.93	HA22A10r_at	HA22A10r	-	-	9e-1	At1g19060	unknown protein	O.I.	H.G.	S.X.
0.33	42.6	0.93	HVSMEl0011A04f_at	HVSMEl0011A04f	-	-	3e-22	Atcg00180	-	O.I.	H.G.	S.X.
0.27	32.1	0.92	Contig24790_at	Contig24790	-	-	4e+0	At2g41440	unknown protein	O.I.	H.G.	S.X.
0.27	32.1	0.93	Contig13970_at	Contig13970	-	-	6e-13	At4g00740	dehydration-responsive protein-related	O.I.	H.G.	S.X.
0.27	32.1	0.96	Contig12493_at	Contig12493	-	-	5e-8	At1g54115	CCX4 (CATION CALCIUM EXCHANGER 4)	O.I.	H.G.	S.X.
0.26	30.4	0.94	Contig16272_at	Contig16272	-	-	2e+0	At3g22030	receptor-like protein kinase-related	O.I.	H.G.	S.X.
0.25	28.9	0.95	Contig5087_at	Contig5087	-	-	1e-2	At4g17520	nuclear RNA-binding protein, putative	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.5 98.2 GSM238428 Embryo 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.0 97.2 GSM261045 after 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.8 97.0 GSM261047 after 3 days in mannitol medium rep3 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.3 96.4 GSM261046 after 3 days in mannitol medium rep2 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.0 96.0 GSM238412 Endosperm 4DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
3.9 95.8 GSM238409 Pericarp 4DAF; seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
3.9 95.8 GSM238429 Embryo 16DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
3.8 95.7 GSM238410 Pericarp 8DAF; seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
3.8 95.7 GSM238430 Embryo 25DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
3.5 95.1 GSM238435 Embryo 24 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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