Co-expression analysis

Gene ID	Contig5857_at
Gene name
Homology with Arabidopsis	Similar to At1g02965: unknown protein (HF=2e-1)
Module size	6 genes
NF	0.38
%ile	51.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	90.8	0.95	Contig5857_at	Contig5857	-	-	2e-1	At1g02965	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.95	Contig15213_at	Contig15213	-	-	1e-1	At4g27745	-	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.95	Contig12308_at	Contig12308	-	-	1e-5	At3g23530	cyclopropane fatty acid synthase, putative / CPA-FA synthase, putative	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.96	Contig10621_at	Contig10621	-	-	4e-1	At1g14315	-	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.95	Contig10520_s_at	Contig10520	-	-	3e-1	At4g39990	RABA4B (RAB GTPASE HOMOLOG A4B)	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.95	Contig6884_s_at	Contig6884	-	-	9e-5	At4g34100	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.5	98.2	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.0	97.2	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.8	97.0	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.3	96.4	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.0	96.0	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.9	95.8	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.9	95.8	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.8	95.7	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.8	95.7	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.5	95.1	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the wheat gene, Ta.5052.1.A1_at, orthologous to the query gene, Contig5857_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.79	91.3	Ta.5052.1.A1_at	At1g02965	-	-	2e+0	At4g24420	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.35	49.8	TaAffx.92707.2.S1_at	At1g02965	-	-	5e+0	At5g35760	beta-galactosidase	O.I.	H.G.	S.X.	Please select
0.32	44.4	Ta.5711.2.S1_x_at	At1g02965	-	-	4e+0	At5g41560	-	O.I.	H.G.	S.X.	Please select
0.28	39.2	Ta.13978.1.S1_at	At1g02965	-	-	1e+0	At5g56350	pyruvate kinase, putative	O.I.	H.G.	S.X.	Please select
0.26	33.6	Ta.5711.1.S1_at	At1g02965	-	-	2e+0	At1g30670	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please select
0.25	32.1	Ta.5711.2.S1_at	At1g02965	-	-	4e+0	At5g41560	-	O.I.	H.G.	S.X.	Please select
0.25	32.1	Ta.5711.3.S1_x_at	At1g02965	-	-	5e-7	At1g56423	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	27.1	Ta.10335.1.S1_at	At1g02965	-	-	2e-1	At1g29610	-	O.I.	H.G.	S.X.	Please select
0.20	24.0	Ta.12858.1.S1_at	At1g02965	-	-	8e+0	At5g63500	unknown protein	O.I.	H.G.	S.X.	Please select
0.18	21.0	Ta.8476.1.S1_a_at	At1g02965	-	-	1e+0	At1g72680	cinnamyl-alcohol dehydrogenase, putative	O.I.	H.G.	S.X.	Please select
0.18	21.0	Ta.465.1.S1_at	At1g02965	-	-	2e-1	At4g08690	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein	O.I.	H.G.	S.X.	Please select
0.17	19.8	Ta.13774.1.S1_at	At1g02965	-	-	3e-8	At4g36195	serine carboxypeptidase S28 family protein	O.I.	H.G.	S.X.	Please select
0.17	19.8	Ta.28252.1.A1_at	At1g02965	-	-	3e-4	At1g11180	secretory carrier membrane protein (SCAMP) family protein	O.I.	H.G.	S.X.	Please select
0.16	18.2	Ta.21956.1.S1_at	At1g02965	-	-	1e-6	At3g15090	oxidoreductase, zinc-binding dehydrogenase family protein	O.I.	H.G.	S.X.	Please select
0.15	17.1	Ta.28252.1.A1_x_at	At1g02965	-	-	3e-4	At1g11180	secretory carrier membrane protein (SCAMP) family protein	O.I.	H.G.	S.X.	Please select
0.15	17.1	Ta.4986.1.S1_at	At1g02965	-	-	5e-8	At5g05690	CPD (CONSTITUTIVE PHOTOMORPHOGENIC DWARF)	O.I.	H.G.	S.X.	Please select
0.15	17.1	Ta.4278.1.S1_at	At1g02965	-	-	2e-16	At3g25040	ER lumen protein retaining receptor, putative / HDEL receptor, putative	O.I.	H.G.	S.X.	Please select
0.15	17.1	Ta.1074.1.S1_x_at	At1g02965	-	-	5e-1	At2g04340	unknown protein	O.I.	H.G.	S.X.	Please select
0.13	14.6	Ta.8476.2.S1_at	At1g02965	-	-	1e-1	At1g80120	unknown protein	O.I.	H.G.	S.X.	Please select
0.13	14.6	Ta.2829.1.S1_at	At1g02965	-	-	3e-16	At4g01100	ADNT1 (ADENINE NUCLEOTIDE TRANSPORTER 1)	O.I.	H.G.	S.X.	Please select
0.13	14.6	Ta.28264.1.S1_at	At1g02965	-	-	7e+0	At4g03370	ubiquitin family protein	O.I.	H.G.	S.X.	Please select
0.12	13.3	Ta.6060.1.A1_at	At1g02965	-	-	3e-1	At3g45210	unknown protein	O.I.	H.G.	S.X.	Please select
0.10	11.3	Ta.10534.1.S1_a_at	At1g02965	-	-	4e-1	At4g11485	LCR11 (Low-molecular-weight cysteine-rich 11)	O.I.	H.G.	S.X.	Please select
0.10	11.3	Ta.27292.1.S1_at	At1g02965	ubiquitin	-	1e-100	At4g02890	UBQ14	O.I.	H.G.	S.X.	Please select
0.09	10.4	TaAffx.111254.1.S1_s_at	At1g02965	-	-	6e-1	At3g24170	ATGR1 (glutathione-disulfide reductase)	O.I.	H.G.	S.X.	Please select
0.06	7.6	Ta.8016.1.S1_at	At1g02965	-	-	2e+0	At3g50460	HR2 (HOMOLOG OF RPW8 2)	O.I.	H.G.	S.X.	Please select
0.05	6.7	Ta.7987.1.S1_at	At1g02965	-	-	6e+0	At2g11522	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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