CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig5857_at

Gene name
Homology with Arabidopsis Similar to At1g02965: unknown protein (HF=2e-1)

Module size 6 genes

NF 0.38

%ile 51.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.77 90.8 0.95 Contig5857_at Contig5857 - - 2e-1 At1g02965 unknown protein O.I. H.G. S.X.
0.60 77.3 0.95 Contig15213_at Contig15213 - - 1e-1 At4g27745 - O.I. H.G. S.X.
0.50 66.9 0.95 Contig12308_at Contig12308 - - 1e-5 At3g23530 cyclopropane fatty acid synthase, putative / CPA-FA synthase, putative O.I. H.G. S.X.
0.50 66.9 0.96 Contig10621_at Contig10621 - - 4e-1 At1g14315 - O.I. H.G. S.X.
0.19 19.6 0.95 Contig10520_s_at Contig10520 - - 3e-1 At4g39990 RABA4B (RAB GTPASE HOMOLOG A4B) O.I. H.G. S.X.
0.17 16.9 0.95 Contig6884_s_at Contig6884 - - 9e-5 At4g34100 protein binding / zinc ion binding O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.5 98.2 GSM238428 Embryo 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.0 97.2 GSM261045 after 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.8 97.0 GSM261047 after 3 days in mannitol medium rep3 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.3 96.4 GSM261046 after 3 days in mannitol medium rep2 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.0 96.0 GSM238412 Endosperm 4DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
3.9 95.8 GSM238409 Pericarp 4DAF; seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
3.9 95.8 GSM238429 Embryo 16DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
3.8 95.7 GSM238410 Pericarp 8DAF; seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
3.8 95.7 GSM238430 Embryo 25DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
3.5 95.1 GSM238435 Embryo 24 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.200806.1.S1_at, orthologous to the query gene, Contig5857_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.60 86.0 PtpAffx.200806.1.S1_at At1g02965 hypothetical protein - 6e-20 At3g46220 unknown protein O.I. H.G. S.X.
0.55 82.2 PtpAffx.64585.1.A1_at At1g02965 hypothetical protein - 3e-37 At2g31510 IBR domain-containing protein / ARIADNE-like protein ARI7 (ARI7) O.I. H.G. S.X.
0.39 64.6 PtpAffx.205626.1.S1_at At1g02965 hypothetical protein - 1e-82 At1g71696 SOL1 (SUPPRESSOR OF LLP1 1) O.I. H.G. S.X.
0.33 57.5 PtpAffx.114887.1.S1_at At1g02965 hypothetical protein - 8e-60 At5g10490 MSL2 (MscS-LIKE 2) O.I. H.G. S.X.
0.33 57.5 PtpAffx.13683.2.A1_a_at At1g02965 hypothetical protein - 3e-1 At5g44582 unknown protein O.I. H.G. S.X.
0.23 40.5 PtpAffx.157284.1.S1_at At1g02965 hypothetical protein - 1e-37 At1g17720 ATB BETA O.I. H.G. S.X.
0.17 29.1 Ptp.3625.1.A1_at At1g02965 hypothetical protein - 2e-12 At3g07560 PEX13 (PEROXIN 13) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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