Co-expression analysis

Gene ID	Contig5857_at
Gene name
Homology with Arabidopsis	Similar to At1g02965: unknown protein (HF=2e-1)
Module size	6 genes
NF	0.38
%ile	51.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	90.8	0.95	Contig5857_at	Contig5857	-	-	2e-1	At1g02965	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.95	Contig15213_at	Contig15213	-	-	1e-1	At4g27745	-	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.95	Contig12308_at	Contig12308	-	-	1e-5	At3g23530	cyclopropane fatty acid synthase, putative / CPA-FA synthase, putative	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.96	Contig10621_at	Contig10621	-	-	4e-1	At1g14315	-	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.95	Contig10520_s_at	Contig10520	-	-	3e-1	At4g39990	RABA4B (RAB GTPASE HOMOLOG A4B)	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.95	Contig6884_s_at	Contig6884	-	-	9e-5	At4g34100	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.5	98.2	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.0	97.2	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.8	97.0	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.3	96.4	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.0	96.0	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.9	95.8	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.9	95.8	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.8	95.7	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.8	95.7	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.5	95.1	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the soybean gene, PsAffx.CL1093Contig1_at, orthologous to the query gene, Contig5857_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	74.2	PsAffx.CL1093Contig1_at	At1g02965	-	-	4e-1	At2g23320	WRKY15	O.I.	H.G.	S.X.	Please select
0.46	65.5	PsAffx.C21000032_at	At1g02965	-	-	2e+0	At1g26840	ORC6 (ORIGIN RECOGNITION COMPLEX PROTEIN 6)	O.I.	H.G.	S.X.	Please select
0.33	46.1	PsAffx.C24000088_at	At1g02965	-	-	3e+0	At5g51280	DEAD-box protein abstrakt, putative	O.I.	H.G.	S.X.	Please select
0.31	42.2	PsAffx.psHB040xF22f_s_at	At1g02965	-	-	1e+1	At5g05360	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	32.6	PsAffx.C143000013_at	At1g02965	-	-	2e+0	At5g49800	-	O.I.	H.G.	S.X.	Please select
0.17	21.2	PsAffx.C43000039_at	At1g02965	-	-	3e+0	At4g01590	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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