Co-expression analysis

Gene ID	Contig5856_at
Gene name
Homology with Arabidopsis	Similar to At4g24420: RNA recognition motif (RRM)-containing protein (HF=2e+0)
Module size	6 genes
NF	0.11
%ile	13.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.94	Contig5856_at	Contig5856	-	-	2e+0	At4g24420	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.18	18.2	0.96	Contig2507_at	Contig2507	-	-	2e-51	At2g44100	ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1)	O.I.	H.G.	S.X.	Please select
0.14	12.9	0.96	Contig12202_at	Contig12202	-	-	2e-1	At3g10430	F-box family protein	O.I.	H.G.	S.X.	Please select
0.12	10.4	0.96	Contig12438_at	Contig12438	-	-	2e-5	At5g08740	NDC1 (NAD(P)H dehydrogenase C1)	O.I.	H.G.	S.X.	Please select
0.06	4.8	0.94	Contig2700_x_at	Contig2700	-	-	1e+0	At1g23890	NHL repeat-containing protein	O.I.	H.G.	S.X.	Please select
0.05	4.1	0.95	Contig23565_at	Contig23565	-	-	2e+0	At4g14819	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
31.3	99.9	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
26.8	99.8	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
12.8	99.4	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
10.4	99.2	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
9.1	98.9	GSM282025	Control_dryseed_Morex_rep1	GSE11200	Expression data from malting barley seeds
8.7	98.9	GSM282041	Control_dryseed_Morex_rep2	GSE11200	Expression data from malting barley seeds
8.2	98.7	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.1	98.4	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.9	98.3	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.3	96.4	GSM238420	Endosperm 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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