Co-expression analysis

Gene ID	Contig5845_at
Gene name
Homology with Arabidopsis	Similar to At2g34510: - (HF=3e-3)
Module size	28 genes
NF	0.40
%ile	55.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.87	95.0	0.82	Contig5845_at	Contig5845	-	-	3e-3	At2g34510	-	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.84	Contig11807_at	Contig11807	-	-	3e-1	At2g37390	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select
0.54	70.3	0.90	HVSMEf0013J01r2_at	HVSMEf0013J01r2	-	-	2e-2	At2g39415	F-box family protein	O.I.	H.G.	S.X.	Please select
0.51	67.5	0.88	Contig14057_at	Contig14057	-	-	6e-1	At5g14980	esterase/lipase/thioesterase family protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.85	Contig588_at	Contig588	-	-	6e-29	At5g36790	phosphoglycolate phosphatase, putative	O.I.	H.G.	S.X.	Please select
0.49	63.7	0.89	Contig191_at	Contig191	-	-	7e-6	At2g33740	CUTA	O.I.	H.G.	S.X.	Please select
0.49	63.7	0.89	Contig19980_at	Contig19980	-	-	1e+0	At2g20160	MEO (MEIDOS)	O.I.	H.G.	S.X.	Please select
0.49	63.7	0.89	Contig18967_at	Contig18967	-	-	7e-25	At3g03940	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.89	Contig15941_at	Contig15941	-	-	2e-1	At2g38820	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.89	HX14B03r_at	HX14B03r	-	-	2e-2	At1g09190	-	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.91	HO10M16S_at	HO10M16S	-	-	7e-5	At5g28630	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.84	Contig13953_at	Contig13953	-	-	4e-5	At2g35450	catalytic/ hydrolase	O.I.	H.G.	S.X.	Please select
0.41	53.9	0.92	HR01O04u_at	HR01O04u	-	-	1e+0	At4g35860	ATGB2 (GTP-BINDING 2)	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.83	EBro02_SQ004_K12_at	EBro02_SQ004_K12	-	-	5e+0	At5g09370	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.89	Contig21919_at	Contig21919	-	-	1e+0	At2g41980	seven in absentia (SINA) family protein	O.I.	H.G.	S.X.	Please select
0.37	47.9	0.89	Contig20164_at	Contig20164	-	-	8e+0	At4g18230	-	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.90	Contig2284_at	Contig2284	-	-	5e-13	At2g32720	CB5-B (CYTOCHROME B5 ISOFORM B)	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.86	Contig18560_at	Contig18560	-	-	2e-9	At3g24590	PLSP1 (plastidic type I signal peptidase 1)	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.89	HVSMEa0003G10r2_at	HVSMEa0003G10r2	-	-	7e-1	At3g50070	CYCD3	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.86	Contig19262_at	Contig19262	-	-	5e+0	At2g24540	AFR (ATTENUATED FAR-RED RESPONSE)	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.83	HV11I05u_x_at	HV11I05u	-	-	5e+0	At2g29930	F-box family protein	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.88	Contig12688_at	Contig12688	-	-	9e-2	At1g79800	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.87	EBro04_SQ003_G13_at	EBro04_SQ003_G13	-	-	2e+0	At5g44450	methyltransferase	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.88	Contig23898_at	Contig23898	-	-	4e-1	At2g01610	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.85	HVSMEn0013N19f_s_at	HVSMEn0013N19f	-	-	1e+0	At4g36100	-	O.I.	H.G.	S.X.	Please select
0.28	35.5	0.87	Contig10154_at	Contig10154	-	-	4e-45	At2g41540	GPDHC1	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.87	Contig17526_at	Contig17526	-	-	4e+0	At4g33020	ZIP9	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.90	Contig1361_at	Contig1361	-	-	3e-1	At4g02340	epoxide hydrolase, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.4	94.8	GSM311254	hsp5_with_aphids_2	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
3.1	94.1	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.0	93.8	GSM363461	Control (C) - rep2	GSE14521	Late response to boron toxicity in barley leaves
3.0	93.8	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.9	93.4	GSM311258	hsp5_without_aphids_3	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
2.7	92.7	GSM261069	Albina f-17 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.6	92.3	GSM261068	Albina f-17 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.6	92.3	GSM261067	Xantha s-46 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.6	92.3	GSM161200	cold treatment rep1	GSE6993	Barley low temperature stress
2.6	92.3	GSM363467	10 mM B(OH)3 treatment (10B) - rep2	GSE14521	Late response to boron toxicity in barley leaves

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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