Co-expression analysis

Gene ID	Contig5815_at
Gene name
Homology with Arabidopsis	Similar to At2g03870: small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative (HF=5e-3)
Module size	27 genes
NF	0.18
%ile	22.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.94	98.9	0.89	Contig5815_at	Contig5815	-	-	5e-3	At2g03870	small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.93	Contig4633_at	Contig4633	-	-	2e+0	At5g42635	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.28	35.5	0.94	HVSMEl0010B09r2_at	HVSMEl0010B09r2	-	-	5e+0	At4g18620	-	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.93	Contig13665_at	Contig13665	-	-	2e+0	At4g18850	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.95	Contig13842_at	Contig13842	-	-	5e+0	At2g20515	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.92	Contig10105_at	Contig10105	-	-	2e+0	At3g19350	MPC (MATERNALLY EXPRESSED PAB C-TERMINAL)	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.95	Contig16736_at	Contig16736	-	-	1e+0	At5g54225	LCR83 (Low-molecular-weight cysteine-rich 83)	O.I.	H.G.	S.X.	Please select
0.18	18.2	0.94	Contig25696_at	Contig25696	-	-	3e-1	At3g23710	chloroplast inner membrane import protein Tic22, putative	O.I.	H.G.	S.X.	Please select
0.18	18.2	0.95	Contig7963_at	Contig7963	-	-	9e-12	At5g63310	NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2)	O.I.	H.G.	S.X.	Please select
0.18	18.2	0.95	Contig17546_s_at	Contig17546	-	-	3e-1	At2g32890	RALFL17 (RALF-LIKE 17)	O.I.	H.G.	S.X.	Please select
0.18	18.2	0.96	Contig4901_s_at	Contig4901	-	-	5e+0	At5g01380	transcription factor	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.94	Contig10341_at	Contig10341	-	-	4e+0	Atmg00120	-	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.95	Contig3596_at	Contig3596	arabinoxylan arabinofuranohydrolase isoenzyme AXAH-II	-	4e-13	At5g26120	ASD2 (ALPHA-L-ARABINOFURANOSIDASE 2)	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.94	Contig22949_at	Contig22949	-	-	3e+0	At2g43280	far-red impaired responsive family protein / FAR1 family protein	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.95	Contig11785_at	Contig11785	-	-	7e-3	At1g34350	unknown protein	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.93	Contig4585_at	Contig4585	-	-	1e-8	At3g09770	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.14	12.9	0.93	Contig12445_at	Contig12445	-	-	5e-1	At4g17486	unknown protein	O.I.	H.G.	S.X.	Please select
0.14	12.9	0.94	Contig3846_at	Contig3846	-	-	6e-23	At3g57650	LPAT2	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.94	Contig10055_at	Contig10055	-	-	5e-8	At3g12740	ALIS1 (ALA-INTERACTING SUBUNIT 1)	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.94	Contig13114_at	Contig13114	-	-	1e+0	At1g14450	unknown protein	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.94	Contig9351_s_at	Contig9351	-	-	1e+0	At5g42070	unknown protein	O.I.	H.G.	S.X.	Please select
0.11	9.4	0.95	Contig14972_at	Contig14972	-	-	4e+0	At1g58725	GDSL-motif lipase, putative	O.I.	H.G.	S.X.	Please select
0.11	9.4	0.95	Contig4654_at	Contig4654	-	-	2e-2	At3g57930	unknown protein	O.I.	H.G.	S.X.	Please select
0.11	9.4	0.95	Contig6616_at	Contig6616	-	-	1e-57	At4g35260	IDH1 (ISOCITRATE DEHYDROGENASE 1)	O.I.	H.G.	S.X.	Please select
0.08	6.5	0.94	Contig6650_at	Contig6650	-	-	8e-1	At5g03550	-	O.I.	H.G.	S.X.	Please select
0.08	6.5	0.95	Contig9474_at	Contig9474	-	-	1e-1	At1g01730	unknown protein	O.I.	H.G.	S.X.	Please select
0.07	5.8	0.95	Contig16505_at	Contig16505	-	-	8e-7	At2g19430	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.0	97.2	GSM282030	Malting_day4_Harrington_rep2	GSE11200	Expression data from malting barley seeds
4.4	96.6	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
3.6	95.3	GSM71145	OWB-D unstress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression
2.4	91.4	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
2.4	91.4	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
2.3	90.9	GSM71147	OWB-D unstress replicate 3	GSE3170	Barley single feature polymorphisms and drought stress gene expression
2.2	90.3	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.2	90.3	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.2	90.3	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
2.2	90.3	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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