Co-expression analysis

Gene ID Contig5814_at
Gene name
Homology with ArabidopsisSimilar to At4g30330: small nuclear ribonucleoprotein E, putative / snRNP-E, putative / Sm protein E, putative (HF=2e-2)
Module size 8 genes
NF 0.06
%ile 8.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8895.20.91Contig5814_atContig5814--2e-2At4g30330small nuclear ribonucleoprotein E, putative / snRNP-E, putative / Sm protein E, putativeO.I.H.G.S.X.
0.1210.40.94Contig13222_atContig13222--6e-1At2g17450RHA3AO.I.H.G.S.X.
0.108.40.95HS08H14u_s_atHS08H14u--1e+0At5g04030unknown proteinO.I.H.G.S.X.
0.064.80.91Contig14882_atContig14882--3e-3At5g08400unknown proteinO.I.H.G.S.X.
0.064.80.92Contig11070_atContig11070--2e-1At5g62500ATEB1B (END BINDING PROTEIN 1B)O.I.H.G.S.X.
0.043.40.93Contig23761_atContig23761--1e+0At4g09070-O.I.H.G.S.X.
0.032.60.94Contig3645_atContig3645--7e-9At5g55850NOIO.I.H.G.S.X.
0.032.60.92Contig19727_atContig19727--1e+0At5g51790basix helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.398.5GSM215727Control (DMSO) treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
5.997.9GSM215730Control (DMSO) treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
4.897.0GSM238419Endosperm 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.995.8GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.695.3GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.394.6GSM1611487% SWC rep3GSE6990Barley drought stressLink to GEO
3.194.1GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.194.1GSM440966Stressed palea_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
2.993.4GSM440972Stressed awn_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
2.893.1GSM282031Malting_day1_Harrington_rep1GSE11200Expression data from malting barley seedsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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