Co-expression analysis

Gene ID	Contig5809_at
Gene name
Homology with Arabidopsis	Similar to At1g58440: XF1 (HF=2e-14)
Module size	8 genes
NF	0.72
%ile	92.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	0.89	Contig5809_at	Contig5809	-	-	2e-14	At1g58440	XF1	O.I.	H.G.	S.X.	Please select
0.78	91.2	0.89	Contig5966_at	Contig5966	-	-	9e-2	At4g33360	terpene cyclase/mutase-related	O.I.	H.G.	S.X.	Please select
0.78	91.2	0.89	Contig10453_at	Contig10453	-	-	9e-1	At5g19485	transferase	O.I.	H.G.	S.X.	Please select
0.71	87.1	0.92	Contig13318_at	Contig13318	-	-	1e-2	At3g59010	pectinesterase family protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.89	Contig5969_at	Contig5969	-	-	7e-4	At1g64970	G-TMT (GAMMA-TOCOPHEROL METHYLTRANSFERASE)	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.90	Contig2772_s_at	Contig2772	-	-	4e-50	At5g49910	CPHSC70-2EAT SHOCK PROTEIN 70-2 (CHLOROPLAST HEAT SHOCK PROTEIN 70-2)	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.90	Contig11946_at	Contig11946	-	-	2e+0	At1g49950	DNA-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.58	74.9	0.89	Contig5490_at	Contig5490	-	-	3e-1	At3g14680	CYP72A14	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.7	95.5	GSM146369	Golden Promise shoot Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.5	95.1	GSM261026	ABA-Early-rep3	GSE10328	ABA experiment
3.2	94.3	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.0	93.8	GSM68889	3 h control replicate 1	GSE3097	Barley1 salinity stress study
3.0	93.8	GSM261023	ABA-Control-rep3	GSE10328	ABA experiment
2.9	93.4	GSM146375	Maythorpe shoot Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
2.8	93.1	GSM146372	Golden Promise shoot Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
2.8	93.1	GSM261021	ABA-Control-rep1	GSE10328	ABA experiment
2.8	93.1	GSM146378	Maythorpe shoot Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
2.7	92.7	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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