Co-expression analysis

Gene ID Contig5809_at
Gene name
Homology with ArabidopsisSimilar to At1g58440: XF1 (HF=2e-14)
Module size 8 genes
NF 0.72
%ile 92.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6784.70.89Contig5809_atContig5809--2e-14At1g58440XF1O.I.H.G.S.X.
0.7891.20.89Contig5966_atContig5966--9e-2At4g33360terpene cyclase/mutase-relatedO.I.H.G.S.X.
0.7891.20.89Contig10453_atContig10453--9e-1At5g19485transferaseO.I.H.G.S.X.
0.7187.10.92Contig13318_atContig13318--1e-2At3g59010pectinesterase family proteinO.I.H.G.S.X.
0.6784.70.89Contig5969_atContig5969--7e-4At1g64970G-TMT (GAMMA-TOCOPHEROL METHYLTRANSFERASE)O.I.H.G.S.X.
0.6784.70.90Contig2772_s_atContig2772--4e-50At5g49910CPHSC70-2EAT SHOCK PROTEIN 70-2 (CHLOROPLAST HEAT SHOCK PROTEIN 70-2)O.I.H.G.S.X.
0.6178.70.90Contig11946_atContig11946--2e+0At1g49950DNA-binding protein, putativeO.I.H.G.S.X.
0.5874.90.89Contig5490_atContig5490--3e-1At3g14680CYP72A14O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.795.5GSM146369Golden Promise shoot Control, biological rep1GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.595.1GSM261026ABA-Early-rep3GSE10328ABA experimentLink to GEO
3.294.3GSM238436Embryo 48 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.093.8GSM688893 h control replicate 1GSE3097Barley1 salinity stress studyLink to GEO
3.093.8GSM261023ABA-Control-rep3GSE10328ABA experimentLink to GEO
2.993.4GSM146375Maythorpe shoot Control, biological rep1GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
2.893.1GSM146372Golden Promise shoot Salt, biological rep 1GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
2.893.1GSM261021ABA-Control-rep1GSE10328ABA experimentLink to GEO
2.893.1GSM146378Maythorpe shoot Salt, biological rep 1GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
2.792.7GSM261022ABA-Control-rep2GSE10328ABA experimentLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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