Co-expression analysis

Gene ID Contig5782_at
Gene name
Homology with ArabidopsisSimilar to At5g63740: zinc finger protein-related (HF=9e-3)
Module size 6 genes
NF 0.47
%ile 65.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4762.20.93Contig5782_atContig5782--9e-3At5g63740zinc finger protein-relatedO.I.H.G.S.X.
0.5572.00.92Contig11436_atContig11436--5e-23At2g03270DNA-binding protein, putativeO.I.H.G.S.X.
0.5066.90.94Contig3527_atContig3527--4e-169At5g19990RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A)O.I.H.G.S.X.
0.4661.00.93Contig3707_s_atContig3707--1e-23At1g16180TMS membrane family protein / tumour differentially expressed (TDE) family proteinO.I.H.G.S.X.
0.4053.10.93Contig11434_atContig11434--3e-20At3g20290ATEHD1 (EPS15 HOMOLOGY DOMAIN 1)O.I.H.G.S.X.
0.3037.00.93Contig6931_atContig6931--8e-1At2g04480unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.893.1GSM398256Martin_3d_rep2GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
2.893.1GSM398270HS41-1_5d_rep1GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
2.792.7GSM398255Martin_3d_rep1GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
2.692.3GSM398258Martin_5d_rep1GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
2.692.3GSM431573pathogen isolates: Polymyxa betae - rep3GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
2.692.3GSM398257Martin_3d_rep3GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
2.692.3GSM398259Martin_5d_rep2GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
2.692.3GSM261079Albina e-16 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.591.9GSM431569pathogen isolates: Mock inoculated control - rep2GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
2.491.4GSM238437Embryo 48 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.14566.1.S1_at, orthologous to the query gene, Contig5782_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6785.8Zm.14566.1.S1_atAt5g63740photosystem II 11 kD protein-4e-1At2g05510glycine-rich proteinO.I.H.G.S.X.
0.6785.8Zm.6166.2.A1_atAt5g63740hypothetical protein LOC100278925-6e-2At1g13870DRL1 (DEFORMED ROOTS AND LEAVES 1)O.I.H.G.S.X.
0.4759.9Zm.10799.1.S1_atAt5g63740hypothetical protein LOC100192060-3e+0At5g20110dynein light chain, putativeO.I.H.G.S.X.
0.4658.4Zm.13623.1.A1_atAt5g63740--1e+0At5g11600unknown proteinO.I.H.G.S.X.
0.4658.4Zm.789.1.S1_atAt5g63740protein phosphatase 2C-1e-6At3g51370protein phosphatase 2C, putative / PP2C, putativeO.I.H.G.S.X.
0.4455.7Zm.12571.1.A1_atAt5g63740ribosome recycling factor-5e-1At3g01800ribosome recycling factor family protein / ribosome releasing factor family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



Back to the CoP portal site

Back to the KAGIANA project homepage