Co-expression analysis

Gene ID Contig5782_at
Gene name
Homology with ArabidopsisSimilar to At5g63740: zinc finger protein-related (HF=9e-3)
Module size 6 genes
NF 0.47
%ile 65.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4762.20.93Contig5782_atContig5782--9e-3At5g63740zinc finger protein-relatedO.I.H.G.S.X.
0.5572.00.92Contig11436_atContig11436--5e-23At2g03270DNA-binding protein, putativeO.I.H.G.S.X.
0.5066.90.94Contig3527_atContig3527--4e-169At5g19990RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A)O.I.H.G.S.X.
0.4661.00.93Contig3707_s_atContig3707--1e-23At1g16180TMS membrane family protein / tumour differentially expressed (TDE) family proteinO.I.H.G.S.X.
0.4053.10.93Contig11434_atContig11434--3e-20At3g20290ATEHD1 (EPS15 HOMOLOGY DOMAIN 1)O.I.H.G.S.X.
0.3037.00.93Contig6931_atContig6931--8e-1At2g04480unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.893.1GSM398256Martin_3d_rep2GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
2.893.1GSM398270HS41-1_5d_rep1GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
2.792.7GSM398255Martin_3d_rep1GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
2.692.3GSM398258Martin_5d_rep1GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
2.692.3GSM431573pathogen isolates: Polymyxa betae - rep3GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
2.692.3GSM398257Martin_3d_rep3GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
2.692.3GSM398259Martin_5d_rep2GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
2.692.3GSM261079Albina e-16 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.591.9GSM431569pathogen isolates: Mock inoculated control - rep2GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
2.491.4GSM238437Embryo 48 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

A co-expression module including the wheat gene, Ta.22587.1.S1_x_at, orthologous to the query gene, Contig5782_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8292.7Ta.22587.1.S1_x_atAt5g63740--6e+0At5g63740zinc finger protein-relatedO.I.H.G.S.X.
0.7589.8Ta.3916.1.S1_a_atAt5g63740--5e-1At1g10960ATFD1 (FERREDOXIN 1)O.I.H.G.S.X.
0.7188.0TaAffx.80290.1.S1_atAt5g63740--8e-2At1g10960ATFD1 (FERREDOXIN 1)O.I.H.G.S.X.
0.6282.3Ta.1988.3.S1_atAt5g63740--2e-20At3g55800SBPASE (sedoheptulose-bisphosphatase)O.I.H.G.S.X.
0.6282.3Ta.28363.1.A1_atAt5g63740--1e-1At5g64040PSANO.I.H.G.S.X.
0.6282.3Ta.3581.1.S1_x_atAt5g63740--1e-2At1g31330PSAF (photosystem I subunit F)O.I.H.G.S.X.
0.6282.3Ta.1971.2.S1_x_atAt5g63740--4e-1At5g08290YLS8O.I.H.G.S.X.
0.6282.3Ta.1988.3.S1_x_atAt5g63740--2e-20At3g55800SBPASE (sedoheptulose-bisphosphatase)O.I.H.G.S.X.
0.6182.0TaAffx.80290.1.S1_x_atAt5g63740--8e-2At1g10960ATFD1 (FERREDOXIN 1)O.I.H.G.S.X.
0.5879.2Ta.12565.2.S1_atAt5g63740chloroplast Ptr ToxA-binding protein-1e-11At2g20890PSB29O.I.H.G.S.X.
0.5779.2Ta.1135.1.S1_atAt5g63740--2e-13At1g42970GAPB (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE B SUBUNIT)O.I.H.G.S.X.
0.5678.6Ta.27751.3.S1_x_atAt5g63740--4e-10At4g12800PSAL (photosystem I subunit L)O.I.H.G.S.X.
0.5576.8Ta.2402.1.S1_atAt5g63740--7e-12At3g54890LHCA1O.I.H.G.S.X.
0.5475.5Ta.28363.1.A1_x_atAt5g63740--1e-1At5g64040PSANO.I.H.G.S.X.
0.5374.9Ta.439.1.S1_atAt5g63740pre-FBPase protein-6e-23At3g54050fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putativeO.I.H.G.S.X.
0.5273.7Ta.1988.2.S1_x_atAt5g63740--1e-18At3g55800SBPASE (sedoheptulose-bisphosphatase)O.I.H.G.S.X.
0.5072.4Ta.28363.2.S1_atAt5g63740--1e-4At5g64040PSANO.I.H.G.S.X.
0.4969.7Ta.27751.3.S1_atAt5g63740--4e-10At4g12800PSAL (photosystem I subunit L)O.I.H.G.S.X.
0.4969.7Ta.28361.1.S1_x_atAt5g63740--8e-2At4g01150unknown proteinO.I.H.G.S.X.
0.4969.7Ta.30808.1.S1_s_atAt5g63740--4e-15At3g26650GAPA (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT)O.I.H.G.S.X.
0.4969.7Ta.1971.1.S1_a_atAt5g63740--5e-1At5g08290YLS8O.I.H.G.S.X.
0.4869.0Ta.85.1.S1_atAt5g6374023kDa oxygen evolving protein of photosystem II-2e-10At1g06680PSBP-1 (PHOTOSYSTEM II SUBUNIT P-1)O.I.H.G.S.X.
0.4767.9Ta.1977.1.S1_x_atAt5g63740--1e+1At5g60590yrdC protein-relatedO.I.H.G.S.X.
0.4565.2TaAffx.80290.2.S1_atAt5g63740--7e-2At1g10960ATFD1 (FERREDOXIN 1)O.I.H.G.S.X.
0.4464.5Ta.136.1.S1_atAt5g63740thioredoxin M-1e-1At2g47350PAPA-1-like family protein / zinc finger (HIT type) family proteinO.I.H.G.S.X.
0.3956.1Ta.1988.1.S1_x_atAt5g63740--3e-20At3g55800SBPASE (sedoheptulose-bisphosphatase)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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