CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig5782_at

Gene name
Homology with Arabidopsis Similar to At5g63740: zinc finger protein-related (HF=9e-3)

Module size 6 genes

NF 0.47

%ile 65.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.47 62.2 0.93 Contig5782_at Contig5782 - - 9e-3 At5g63740 zinc finger protein-related O.I. H.G. S.X.
0.55 72.0 0.92 Contig11436_at Contig11436 - - 5e-23 At2g03270 DNA-binding protein, putative O.I. H.G. S.X.
0.50 66.9 0.94 Contig3527_at Contig3527 - - 4e-169 At5g19990 RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) O.I. H.G. S.X.
0.46 61.0 0.93 Contig3707_s_at Contig3707 - - 1e-23 At1g16180 TMS membrane family protein / tumour differentially expressed (TDE) family protein O.I. H.G. S.X.
0.40 53.1 0.93 Contig11434_at Contig11434 - - 3e-20 At3g20290 ATEHD1 (EPS15 HOMOLOGY DOMAIN 1) O.I. H.G. S.X.
0.30 37.0 0.93 Contig6931_at Contig6931 - - 8e-1 At2g04480 unknown protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.47	62.2	0.93	Contig5782_at	Contig5782	-	-	9e-3	At5g63740	zinc finger protein-related	O.I.	H.G.	S.X.
0.55	72.0	0.92	Contig11436_at	Contig11436	-	-	5e-23	At2g03270	DNA-binding protein, putative	O.I.	H.G.	S.X.
0.50	66.9	0.94	Contig3527_at	Contig3527	-	-	4e-169	At5g19990	RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A)	O.I.	H.G.	S.X.
0.46	61.0	0.93	Contig3707_s_at	Contig3707	-	-	1e-23	At1g16180	TMS membrane family protein / tumour differentially expressed (TDE) family protein	O.I.	H.G.	S.X.
0.40	53.1	0.93	Contig11434_at	Contig11434	-	-	3e-20	At3g20290	ATEHD1 (EPS15 HOMOLOGY DOMAIN 1)	O.I.	H.G.	S.X.
0.30	37.0	0.93	Contig6931_at	Contig6931	-	-	8e-1	At2g04480	unknown protein	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.8 93.1 GSM398256 Martin_3d_rep2 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.8 93.1 GSM398270 HS41-1_5d_rep1 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.7 92.7 GSM398255 Martin_3d_rep1 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.6 92.3 GSM398258 Martin_5d_rep1 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.6 92.3 GSM431573 pathogen isolates: Polymyxa betae - rep3 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
2.6 92.3 GSM398257 Martin_3d_rep3 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.6 92.3 GSM398259 Martin_5d_rep2 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.6 92.3 GSM261079 Albina e-16 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.5 91.9 GSM431569 pathogen isolates: Mock inoculated control - rep2 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
2.4 91.4 GSM238437 Embryo 48 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
2.8	93.1	GSM398256	Martin_3d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.8	93.1	GSM398270	HS41-1_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.7	92.7	GSM398255	Martin_3d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.6	92.3	GSM398258	Martin_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.6	92.3	GSM431573	pathogen isolates: Polymyxa betae - rep3	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
2.6	92.3	GSM398257	Martin_3d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.6	92.3	GSM398259	Martin_5d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.6	92.3	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.5	91.9	GSM431569	pathogen isolates: Mock inoculated control - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
2.4	91.4	GSM238437	Embryo 48 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the wheat gene, Ta.22587.1.S1_x_at, orthologous to the query gene, Contig5782_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.82 92.7 Ta.22587.1.S1_x_at At5g63740 - - 6e+0 At5g63740 zinc finger protein-related O.I. H.G. S.X.
0.75 89.8 Ta.3916.1.S1_a_at At5g63740 - - 5e-1 At1g10960 ATFD1 (FERREDOXIN 1) O.I. H.G. S.X.
0.71 88.0 TaAffx.80290.1.S1_at At5g63740 - - 8e-2 At1g10960 ATFD1 (FERREDOXIN 1) O.I. H.G. S.X.
0.62 82.3 Ta.1988.3.S1_at At5g63740 - - 2e-20 At3g55800 SBPASE (sedoheptulose-bisphosphatase) O.I. H.G. S.X.
0.62 82.3 Ta.28363.1.A1_at At5g63740 - - 1e-1 At5g64040 PSAN O.I. H.G. S.X.
0.62 82.3 Ta.3581.1.S1_x_at At5g63740 - - 1e-2 At1g31330 PSAF (photosystem I subunit F) O.I. H.G. S.X.
0.62 82.3 Ta.1971.2.S1_x_at At5g63740 - - 4e-1 At5g08290 YLS8 O.I. H.G. S.X.
0.62 82.3 Ta.1988.3.S1_x_at At5g63740 - - 2e-20 At3g55800 SBPASE (sedoheptulose-bisphosphatase) O.I. H.G. S.X.
0.61 82.0 TaAffx.80290.1.S1_x_at At5g63740 - - 8e-2 At1g10960 ATFD1 (FERREDOXIN 1) O.I. H.G. S.X.
0.58 79.2 Ta.12565.2.S1_at At5g63740 chloroplast Ptr ToxA-binding protein - 1e-11 At2g20890 PSB29 O.I. H.G. S.X.
0.57 79.2 Ta.1135.1.S1_at At5g63740 - - 2e-13 At1g42970 GAPB (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE B SUBUNIT) O.I. H.G. S.X.
0.56 78.6 Ta.27751.3.S1_x_at At5g63740 - - 4e-10 At4g12800 PSAL (photosystem I subunit L) O.I. H.G. S.X.
0.55 76.8 Ta.2402.1.S1_at At5g63740 - - 7e-12 At3g54890 LHCA1 O.I. H.G. S.X.
0.54 75.5 Ta.28363.1.A1_x_at At5g63740 - - 1e-1 At5g64040 PSAN O.I. H.G. S.X.
0.53 74.9 Ta.439.1.S1_at At5g63740 pre-FBPase protein - 6e-23 At3g54050 fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putative O.I. H.G. S.X.
0.52 73.7 Ta.1988.2.S1_x_at At5g63740 - - 1e-18 At3g55800 SBPASE (sedoheptulose-bisphosphatase) O.I. H.G. S.X.
0.50 72.4 Ta.28363.2.S1_at At5g63740 - - 1e-4 At5g64040 PSAN O.I. H.G. S.X.
0.49 69.7 Ta.27751.3.S1_at At5g63740 - - 4e-10 At4g12800 PSAL (photosystem I subunit L) O.I. H.G. S.X.
0.49 69.7 Ta.28361.1.S1_x_at At5g63740 - - 8e-2 At4g01150 unknown protein O.I. H.G. S.X.
0.49 69.7 Ta.30808.1.S1_s_at At5g63740 - - 4e-15 At3g26650 GAPA (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT) O.I. H.G. S.X.
0.49 69.7 Ta.1971.1.S1_a_at At5g63740 - - 5e-1 At5g08290 YLS8 O.I. H.G. S.X.
0.48 69.0 Ta.85.1.S1_at At5g63740 23kDa oxygen evolving protein of photosystem II - 2e-10 At1g06680 PSBP-1 (PHOTOSYSTEM II SUBUNIT P-1) O.I. H.G. S.X.
0.47 67.9 Ta.1977.1.S1_x_at At5g63740 - - 1e+1 At5g60590 yrdC protein-related O.I. H.G. S.X.
0.45 65.2 TaAffx.80290.2.S1_at At5g63740 - - 7e-2 At1g10960 ATFD1 (FERREDOXIN 1) O.I. H.G. S.X.
0.44 64.5 Ta.136.1.S1_at At5g63740 thioredoxin M - 1e-1 At2g47350 PAPA-1-like family protein / zinc finger (HIT type) family protein O.I. H.G. S.X.
0.39 56.1 Ta.1988.1.S1_x_at At5g63740 - - 3e-20 At3g55800 SBPASE (sedoheptulose-bisphosphatase) O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.82	92.7	Ta.22587.1.S1_x_at	At5g63740	-	-	6e+0	At5g63740	zinc finger protein-related	O.I.	H.G.	S.X.
0.75	89.8	Ta.3916.1.S1_a_at	At5g63740	-	-	5e-1	At1g10960	ATFD1 (FERREDOXIN 1)	O.I.	H.G.	S.X.
0.71	88.0	TaAffx.80290.1.S1_at	At5g63740	-	-	8e-2	At1g10960	ATFD1 (FERREDOXIN 1)	O.I.	H.G.	S.X.
0.62	82.3	Ta.1988.3.S1_at	At5g63740	-	-	2e-20	At3g55800	SBPASE (sedoheptulose-bisphosphatase)	O.I.	H.G.	S.X.
0.62	82.3	Ta.28363.1.A1_at	At5g63740	-	-	1e-1	At5g64040	PSAN	O.I.	H.G.	S.X.
0.62	82.3	Ta.3581.1.S1_x_at	At5g63740	-	-	1e-2	At1g31330	PSAF (photosystem I subunit F)	O.I.	H.G.	S.X.
0.62	82.3	Ta.1971.2.S1_x_at	At5g63740	-	-	4e-1	At5g08290	YLS8	O.I.	H.G.	S.X.
0.62	82.3	Ta.1988.3.S1_x_at	At5g63740	-	-	2e-20	At3g55800	SBPASE (sedoheptulose-bisphosphatase)	O.I.	H.G.	S.X.
0.61	82.0	TaAffx.80290.1.S1_x_at	At5g63740	-	-	8e-2	At1g10960	ATFD1 (FERREDOXIN 1)	O.I.	H.G.	S.X.
0.58	79.2	Ta.12565.2.S1_at	At5g63740	chloroplast Ptr ToxA-binding protein	-	1e-11	At2g20890	PSB29	O.I.	H.G.	S.X.
0.57	79.2	Ta.1135.1.S1_at	At5g63740	-	-	2e-13	At1g42970	GAPB (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE B SUBUNIT)	O.I.	H.G.	S.X.
0.56	78.6	Ta.27751.3.S1_x_at	At5g63740	-	-	4e-10	At4g12800	PSAL (photosystem I subunit L)	O.I.	H.G.	S.X.
0.55	76.8	Ta.2402.1.S1_at	At5g63740	-	-	7e-12	At3g54890	LHCA1	O.I.	H.G.	S.X.
0.54	75.5	Ta.28363.1.A1_x_at	At5g63740	-	-	1e-1	At5g64040	PSAN	O.I.	H.G.	S.X.
0.53	74.9	Ta.439.1.S1_at	At5g63740	pre-FBPase protein	-	6e-23	At3g54050	fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putative	O.I.	H.G.	S.X.
0.52	73.7	Ta.1988.2.S1_x_at	At5g63740	-	-	1e-18	At3g55800	SBPASE (sedoheptulose-bisphosphatase)	O.I.	H.G.	S.X.
0.50	72.4	Ta.28363.2.S1_at	At5g63740	-	-	1e-4	At5g64040	PSAN	O.I.	H.G.	S.X.
0.49	69.7	Ta.27751.3.S1_at	At5g63740	-	-	4e-10	At4g12800	PSAL (photosystem I subunit L)	O.I.	H.G.	S.X.
0.49	69.7	Ta.28361.1.S1_x_at	At5g63740	-	-	8e-2	At4g01150	unknown protein	O.I.	H.G.	S.X.
0.49	69.7	Ta.30808.1.S1_s_at	At5g63740	-	-	4e-15	At3g26650	GAPA (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT)	O.I.	H.G.	S.X.
0.49	69.7	Ta.1971.1.S1_a_at	At5g63740	-	-	5e-1	At5g08290	YLS8	O.I.	H.G.	S.X.
0.48	69.0	Ta.85.1.S1_at	At5g63740	23kDa oxygen evolving protein of photosystem II	-	2e-10	At1g06680	PSBP-1 (PHOTOSYSTEM II SUBUNIT P-1)	O.I.	H.G.	S.X.
0.47	67.9	Ta.1977.1.S1_x_at	At5g63740	-	-	1e+1	At5g60590	yrdC protein-related	O.I.	H.G.	S.X.
0.45	65.2	TaAffx.80290.2.S1_at	At5g63740	-	-	7e-2	At1g10960	ATFD1 (FERREDOXIN 1)	O.I.	H.G.	S.X.
0.44	64.5	Ta.136.1.S1_at	At5g63740	thioredoxin M	-	1e-1	At2g47350	PAPA-1-like family protein / zinc finger (HIT type) family protein	O.I.	H.G.	S.X.
0.39	56.1	Ta.1988.1.S1_x_at	At5g63740	-	-	3e-20	At3g55800	SBPASE (sedoheptulose-bisphosphatase)	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage

Gene ID	Contig5782_at
Gene name
Homology with Arabidopsis	Similar to At5g63740: zinc finger protein-related (HF=9e-3)
Module size	6 genes
NF	0.47
%ile	65.2

Co-expression analysis

Gene ID Contig5782_at Gene name Homology with ArabidopsisSimilar to At5g63740: zinc finger protein-related (HF=9e-3) Module size 6 genes NF 0.47 %ile 65.2

Co-expressed genes

Click More genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxOryza_sativaPopulus_trichocarpaVitis_viniferaZea_mays

Gene ID Contig5782_at

Gene name
Homology with Arabidopsis Similar to At5g63740: zinc finger protein-related (HF=9e-3)

Module size 6 genes

NF 0.47

%ile 65.2

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays