Co-expression analysis

Gene ID Contig5782_at
Gene name
Homology with ArabidopsisSimilar to At5g63740: zinc finger protein-related (HF=9e-3)
Module size 6 genes
NF 0.47
%ile 65.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4762.20.93Contig5782_atContig5782--9e-3At5g63740zinc finger protein-relatedO.I.H.G.S.X.
0.5572.00.92Contig11436_atContig11436--5e-23At2g03270DNA-binding protein, putativeO.I.H.G.S.X.
0.5066.90.94Contig3527_atContig3527--4e-169At5g19990RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A)O.I.H.G.S.X.
0.4661.00.93Contig3707_s_atContig3707--1e-23At1g16180TMS membrane family protein / tumour differentially expressed (TDE) family proteinO.I.H.G.S.X.
0.4053.10.93Contig11434_atContig11434--3e-20At3g20290ATEHD1 (EPS15 HOMOLOGY DOMAIN 1)O.I.H.G.S.X.
0.3037.00.93Contig6931_atContig6931--8e-1At2g04480unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.893.1GSM398256Martin_3d_rep2GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
2.893.1GSM398270HS41-1_5d_rep1GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
2.792.7GSM398255Martin_3d_rep1GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
2.692.3GSM398258Martin_5d_rep1GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
2.692.3GSM431573pathogen isolates: Polymyxa betae - rep3GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
2.692.3GSM398257Martin_3d_rep3GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
2.692.3GSM398259Martin_5d_rep2GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
2.692.3GSM261079Albina e-16 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.591.9GSM431569pathogen isolates: Mock inoculated control - rep2GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
2.491.4GSM238437Embryo 48 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os03g0333400, orthologous to the query gene, Contig5782_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5068.0Os03g0333400At5g63740-Conserved hypothetical protein7e+0At3g03150unknown proteinO.I.H.G.S.X.
0.8094.6Os07g0212200At5g63740-MRNA-binding protein (Fragment)6e-20At3g63140CSP41A (CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA)O.I.H.G.S.X.
0.7793.1Os06g0705100At5g63740-Conserved hypothetical protein1e-8At4g02530chloroplast thylakoid lumen proteinO.I.H.G.S.X.
0.7391.1Os05g0401100At5g63740-Protein of unknown function DUF477 family protein6e-1At2g37580zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.6787.2Os10g0516100At5g63740-Glycine decarboxylase complex H-protein3e-8At1g32470glycine cleavage system H protein, mitochondrial, putativeO.I.H.G.S.X.
0.3032.7Os02g0750100At5g63740-H(+)-transporting ATP synthase (EC 3.6.1.34)(Fragment)4e+0At1g47265unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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