CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig5782_at

Gene name
Homology with Arabidopsis Similar to At5g63740: zinc finger protein-related (HF=9e-3)

Module size 6 genes

NF 0.47

%ile 65.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.47 62.2 0.93 Contig5782_at Contig5782 - - 9e-3 At5g63740 zinc finger protein-related O.I. H.G. S.X.
0.55 72.0 0.92 Contig11436_at Contig11436 - - 5e-23 At2g03270 DNA-binding protein, putative O.I. H.G. S.X.
0.50 66.9 0.94 Contig3527_at Contig3527 - - 4e-169 At5g19990 RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) O.I. H.G. S.X.
0.46 61.0 0.93 Contig3707_s_at Contig3707 - - 1e-23 At1g16180 TMS membrane family protein / tumour differentially expressed (TDE) family protein O.I. H.G. S.X.
0.40 53.1 0.93 Contig11434_at Contig11434 - - 3e-20 At3g20290 ATEHD1 (EPS15 HOMOLOGY DOMAIN 1) O.I. H.G. S.X.
0.30 37.0 0.93 Contig6931_at Contig6931 - - 8e-1 At2g04480 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.8 93.1 GSM398256 Martin_3d_rep2 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.8 93.1 GSM398270 HS41-1_5d_rep1 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.7 92.7 GSM398255 Martin_3d_rep1 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.6 92.3 GSM398258 Martin_5d_rep1 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.6 92.3 GSM431573 pathogen isolates: Polymyxa betae - rep3 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
2.6 92.3 GSM398257 Martin_3d_rep3 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.6 92.3 GSM398259 Martin_5d_rep2 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.6 92.3 GSM261079 Albina e-16 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.5 91.9 GSM431569 pathogen isolates: Mock inoculated control - rep2 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
2.4 91.4 GSM238437 Embryo 48 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the rice gene, Os03g0333400, orthologous to the query gene, Contig5782_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 68.0 Os03g0333400 At5g63740 - Conserved hypothetical protein 7e+0 At3g03150 unknown protein O.I. H.G. S.X.
0.80 94.6 Os07g0212200 At5g63740 - MRNA-binding protein (Fragment) 6e-20 At3g63140 CSP41A (CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA) O.I. H.G. S.X.
0.77 93.1 Os06g0705100 At5g63740 - Conserved hypothetical protein 1e-8 At4g02530 chloroplast thylakoid lumen protein O.I. H.G. S.X.
0.73 91.1 Os05g0401100 At5g63740 - Protein of unknown function DUF477 family protein 6e-1 At2g37580 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.67 87.2 Os10g0516100 At5g63740 - Glycine decarboxylase complex H-protein 3e-8 At1g32470 glycine cleavage system H protein, mitochondrial, putative O.I. H.G. S.X.
0.30 32.7 Os02g0750100 At5g63740 - H(+)-transporting ATP synthase (EC 3.6.1.34)(Fragment) 4e+0 At1g47265 unknown protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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