Co-expression analysis

Gene ID	Contig5767_at
Gene name
Homology with Arabidopsis	Similar to At5g10780: - (HF=1e-11)
Module size	10 genes
NF	0.39
%ile	53.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.70	86.0	0.94	Contig5767_at	Contig5767	-	-	1e-11	At5g10780	-	O.I.	H.G.	S.X.	Please select
0.82	93.1	0.95	Contig3102_at	Contig3102	-	-	2e-13	At5g66510	GAMMA CA3 (GAMMA CARBONIC ANHYDRASE 3)	O.I.	H.G.	S.X.	Please select
0.41	53.9	0.95	Contig9485_at	Contig9485	-	-	8e-1	At3g29575	AFP3 (ABI FIVE BINDING PROTEIN 3)	O.I.	H.G.	S.X.	Please select
0.41	53.9	0.95	Contig3100_at	Contig3100	-	-	1e-5	At4g16830	nuclear RNA-binding protein (RGGA)	O.I.	H.G.	S.X.	Please select
0.34	43.6	0.95	Contig5206_s_at	Contig5206	-	-	5e-6	At5g07390	ATRBOHA (respiratory burst oxidase homolog A)	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.95	rbags18j12_s_at	rbags18j12	-	-	3e-6	At1g65980	TPX1 (thioredoxin-dependent peroxidase 1)	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.96	Contig3850_at	Contig3850	-	-	1e-57	At1g79210	20S proteasome alpha subunit B, putative	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.96	Contig6012_at	Contig6012	-	-	6e-16	At3g62580	-	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.95	Contig2826_s_at	Contig2826	-	-	1e-21	At3g44110	ATJ3	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.96	Contig4563_at	Contig4563	-	-	5e-15	At3g17240	mtLPD2 (LIPOAMIDE DEHYDROGENASE 2)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.2	98.7	GSM215727	Control (DMSO) treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
7.1	98.4	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.8	97.8	GSM215730	Control (DMSO) treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
5.6	97.7	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.3	97.4	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.0	97.2	GSM238419	Endosperm 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.8	97.0	GSM215731	gibberellin treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.5	96.7	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.0	96.0	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.5	95.1	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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