Co-expression analysis

Gene ID Contig5753_at
Gene name
Homology with ArabidopsisSimilar to At1g04501: unknown protein (HF=3e-1)
Module size 7 genes
NF 0.49
%ile 69.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6077.30.95Contig5753_atContig5753--3e-1At1g04501unknown proteinO.I.H.G.S.X.
0.5369.70.96Contig5286_atContig5286--6e-1At2g44310calcium-binding EF hand family proteinO.I.H.G.S.X.
0.5066.90.96Contig4271_atContig4271--2e+0At4g09440unknown proteinO.I.H.G.S.X.
0.4661.00.96Contig4747_atContig4747--2e+0At2g05620PGR5 (proton gradient regulation 5)O.I.H.G.S.X.
0.4458.90.97Contig5257_atContig5257--1e+0At4g00200DNA bindingO.I.H.G.S.X.
0.3849.50.97HB24H11r_s_atHB24H11r--8e-1At3g10590myb family transcription factorO.I.H.G.S.X.
0.2935.50.96Contig4846_atContig4846--4e-1At2g42040-O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.699.5GSM238417Endosperm 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
8.898.9GSM431568pathogen isolates: Mock inoculated control - rep1GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
8.698.8GSM238416Endosperm 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
8.498.8GSM431569pathogen isolates: Mock inoculated control - rep2GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
7.498.5GSM431571pathogen isolates: Polymyxa betae - rep1GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
6.498.1GSM431551pathogen isolates: Polymyxa graminis - rep3GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
6.498.1GSM431547pathogen isolates: Mock - rep2GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
5.897.8GSM431548pathogen isolates: Mock - rep3GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
5.697.7GSM238418Endosperm 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.697.7GSM431572pathogen isolates: Polymyxa betae - rep2GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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