Co-expression analysis

Gene ID	Contig5724_at
Gene name
Homology with Arabidopsis	Similar to At1g06570: PDS1 (PHYTOENE DESATURATION 1) (HF=4e-12)
Module size	16 genes
NF	0.64
%ile	86.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.78	91.2	0.96	Contig5724_at	Contig5724	-	-	4e-12	At1g06570	PDS1 (PHYTOENE DESATURATION 1)	O.I.	H.G.	S.X.	Please select
0.80	92.5	0.96	Contig4302_at	Contig4302	-	-	8e-2	At5g48640	cyclin family protein	O.I.	H.G.	S.X.	Please select
0.79	91.4	0.96	Contig5248_s_at	Contig5248	-	-	4e+0	At5g34882	-	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.98	Contig3118_at	Contig3118	-	-	3e-68	At3g27240	cytochrome c1, putative	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.96	Contig2986_at	Contig2986	-	-	1e-39	At3g28710	H+-transporting two-sector ATPase, putative	O.I.	H.G.	S.X.	Please select
0.65	81.4	0.96	Contig3878_at	Contig3878	-	-	9e-6	At5g59890	ADF4 (ACTIN DEPOLYMERIZING FACTOR 4)	O.I.	H.G.	S.X.	Please select
0.65	81.4	0.97	Contig3794_at	Contig3794	-	-	7e-31	At1g16890	ubiquitin-conjugating enzyme, putative	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.96	Contig4563_at	Contig4563	-	-	5e-15	At3g17240	mtLPD2 (LIPOAMIDE DEHYDROGENASE 2)	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.96	EBma04_SQ003_K13_s_at	EBma04_SQ003_K13	-	-	2e+0	At3g60520	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.97	Contig6203_at	Contig6203	-	-	1e-3	At1g70110	lectin protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.58	74.9	0.96	Contig5417_at	Contig5417	-	-	4e+0	At5g47610	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.56	74.3	0.96	Contig6213_at	Contig6213	-	-	8e-4	At1g05850	POM1 (POM-POM1)	O.I.	H.G.	S.X.	Please select
0.56	74.3	0.97	Contig5778_at	Contig5778	-	-	2e-10	At4g22260	IM (IMMUTANS)	O.I.	H.G.	S.X.	Please select
0.51	67.5	0.97	Contig3961_at	Contig3961	-	-	1e+0	At3g29560	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.96	Contig3526_at	Contig3526	-	-	1e-3	At1g11910	aspartyl protease family protein	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.97	Contig3668_at	Contig3668	-	-	5e-1	At5g02030	RPL (REPLUMLESS)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.6	92.3	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.2	90.3	GSM261064	Xantha s-46 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.0	89.0	GSM419976	Palea_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
2.0	89.0	GSM440964	Control palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
1.9	88.2	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
1.9	88.2	GSM160744	drought control rep2	GSE6990	Barley drought stress
1.9	88.2	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
1.9	88.2	GSM398258	Martin_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
1.9	88.2	GSM398263	HS41-1_0d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
1.8	87.4	GSM160815	drought control rep3	GSE6990	Barley drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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