Co-expression analysis

Gene ID Contig5692_s_at
Gene name
Homology with ArabidopsisSimilar to At4g34970: ADF9 (ACTIN DEPOLYMERIZING FACTOR 9) (HF=6e-12)
Module size 6 genes
NF 0.09
%ile 11.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.89Contig5692_s_atContig5692--6e-12At4g34970ADF9 (ACTIN DEPOLYMERIZING FACTOR 9)O.I.H.G.S.X.
0.1818.20.92Contig11307_atContig11307--9e+0At5g02240binding / catalytic/ coenzyme bindingO.I.H.G.S.X.
0.1716.90.90HVSMEi0019G12r2_atHVSMEi0019G12r2--1e+0At3g44890RPL9 (RIBOSOMAL PROTEIN L9)O.I.H.G.S.X.
0.108.40.94Contig12713_atContig12713--7e-3At4g01900GLB1 (GLNB1 HOMOLOG)O.I.H.G.S.X.
0.064.80.94Contig7237_atContig7237--1e-1At3g42180catalytic/ transferase, transferring glycosyl groupsO.I.H.G.S.X.
0.021.80.94Contig15019_atContig15019--3e-11At3g09320zinc finger (DHHC type) family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.497.5GSM261028ABA-Late-rep2GSE10328ABA experimentLink to GEO
5.097.2GSM238433Embryo 0 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.097.2GSM16082619% SWC rep3GSE6990Barley drought stressLink to GEO
4.997.1GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.897.0GSM261022ABA-Control-rep2GSE10328ABA experimentLink to GEO
4.596.7GSM16081938% SWC rep1GSE6990Barley drought stressLink to GEO
4.596.7GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.496.6GSM261024ABA-Early-rep1GSE10328ABA experimentLink to GEO
4.496.6GSM146368Maythorpe Root Salt, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
4.396.4GSM146362Golden Promise Root Salt, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage