Co-expression analysis

Gene ID	Contig5654_at
Gene name
Homology with Arabidopsis	Similar to At4g08900: arginase (HF=9e-59)
Module size	14 genes
NF	0.13
%ile	16.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.87	95.0	0.92	Contig5654_at	Contig5654	-	-	9e-59	At4g08900	arginase	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.94	Contig7789_at	Contig7789	-	-	6e-4	At5g03170	FLA11	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.93	Contig7941_s_at	Contig7941	-	-	2e+0	At3g28950	avirulence-responsive protein-related / avirulence induced gene (AIG) protein-related	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.96	Contig20130_at	Contig20130	-	-	2e+0	At1g74860	unknown protein	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.95	HU12I24r_at	HU12I24r	-	-	9e-1	At5g42520	ATBPC6	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.93	Contig13644_at	Contig13644	-	-	4e-1	At2g18890	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.95	Contig6814_at	Contig6814	-	-	7e-9	At5g59140	SKP1 family protein	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.96	Contig1188_s_at	Contig1188	amylase/protease inhibitor	-	6e+0	At5g05120	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please select
0.12	10.4	0.94	Contig6530_at	Contig6530	-	-	4e+0	At3g46090	ZAT7	O.I.	H.G.	S.X.	Please select
0.11	9.4	0.95	Contig11033_at	Contig11033	-	-	6e-7	At2g01690	binding	O.I.	H.G.	S.X.	Please select
0.10	8.4	0.94	Contig7746_at	Contig7746	-	-	2e+0	At5g48950	thioesterase family protein	O.I.	H.G.	S.X.	Please select
0.09	7.4	0.94	Contig17423_at	Contig17423	-	-	2e-18	At5g23630	ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase familiy protein	O.I.	H.G.	S.X.	Please select
0.08	6.5	0.94	Contig5283_at	Contig5283	-	-	1e-2	At1g25280	AtTLP10 (TUBBY LIKE PROTEIN 10)	O.I.	H.G.	S.X.	Please select
0.05	4.1	0.94	Contig8007_at	Contig8007	-	-	8e-1	At2g38610	KH domain-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.6	99.6	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
12.6	99.4	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
8.5	98.8	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.6	98.6	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.0	97.2	GSM213443	Barley seeds with P. aeruginosa PA5021 mutant for 12hr	GSE8618	P. aeruginosa virulent factor to barley
4.4	96.6	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.2	96.3	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.1	96.2	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.9	95.8	GSM215728	gibberellin treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
3.9	95.8	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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