CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig5626_s_at

Gene name
Homology with Arabidopsis Similar to At5g50260: cysteine proteinase, putative (HF=2e+0)

Module size 6 genes

NF 0.57

%ile 78.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 92.5 0.95 Contig5626_s_at Contig5626 - - 2e+0 At5g50260 cysteine proteinase, putative O.I. H.G. S.X.
0.67 84.7 0.96 Contig13522_at Contig13522 - - 4e-17 At4g02630 protein kinase family protein O.I. H.G. S.X.
0.46 61.0 0.95 Contig7940_x_at Contig7940 - - 9e-43 At4g25550 protein binding O.I. H.G. S.X.
0.46 61.0 0.96 Contig10540_at Contig10540 - - 7e-8 At3g57890 tubulin-specific chaperone C-related O.I. H.G. S.X.
0.40 53.1 0.96 Contig15831_at Contig15831 - - 1e+0 At3g15190 chloroplast 30S ribosomal protein S20, putative O.I. H.G. S.X.
0.36 47.1 0.96 Contig13711_at Contig13711 - - 2e+0 At3g22942 AGG2 (G-PROTEIN GAMMA SUBUNIT 2) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.80	92.5	0.95	Contig5626_s_at	Contig5626	-	-	2e+0	At5g50260	cysteine proteinase, putative	O.I.	H.G.	S.X.
0.67	84.7	0.96	Contig13522_at	Contig13522	-	-	4e-17	At4g02630	protein kinase family protein	O.I.	H.G.	S.X.
0.46	61.0	0.95	Contig7940_x_at	Contig7940	-	-	9e-43	At4g25550	protein binding	O.I.	H.G.	S.X.
0.46	61.0	0.96	Contig10540_at	Contig10540	-	-	7e-8	At3g57890	tubulin-specific chaperone C-related	O.I.	H.G.	S.X.
0.40	53.1	0.96	Contig15831_at	Contig15831	-	-	1e+0	At3g15190	chloroplast 30S ribosomal protein S20, putative	O.I.	H.G.	S.X.
0.36	47.1	0.96	Contig13711_at	Contig13711	-	-	2e+0	At3g22942	AGG2 (G-PROTEIN GAMMA SUBUNIT 2)	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.73	88.7	0.92	Contig21289_at	Contig21289	-	-	4e-1	At1g67260	TCP1	O.I.	H.G.	S.X.
0.55	72.0	0.94	HV05C17u_at	HV05C17u	-	-	3e-1	At1g65820	microsomal glutathione s-transferase, putative	O.I.	H.G.	S.X.
0.55	72.0	0.95	Contig3532_s_at	Contig3532	-	-	8e+0	At4g32605	-	O.I.	H.G.	S.X.
0.50	66.9	0.91	Contig12935_at	Contig12935	-	-	6e-19	At5g06580	FAD linked oxidase family protein	O.I.	H.G.	S.X.
0.50	66.9	0.92	Contig11182_at	Contig11182	-	-	7e-25	At5g36880	acetyl-CoA synthetase, putative / acetate-CoA ligase, putative	O.I.	H.G.	S.X.
0.50	66.9	0.94	Contig25264_at	Contig25264	-	-	3e+0	At1g01010	ANAC001 (Arabidopsis NAC domain containing protein 1)	O.I.	H.G.	S.X.
0.46	61.0	0.95	Contig9165_at	Contig9165	-	-	2e-3	At4g31410	unknown protein	O.I.	H.G.	S.X.
0.46	61.0	0.92	Contig12995_at	Contig12995	-	-	2e+0	At4g12230	esterase/lipase/thioesterase family protein	O.I.	H.G.	S.X.
0.44	58.9	0.94	rbaak22p05_s_at	rbaak22p05	-	-	2e-6	At3g58680	MBF1B (MULTIPROTEIN BRIDGING FACTOR 1B)	O.I.	H.G.	S.X.
0.40	53.1	0.92	HI02N08u_s_at	HI02N08u	-	-	4e-3	At4g19100	unknown protein	O.I.	H.G.	S.X.
0.40	53.1	0.93	Contig1402_at	Contig1402	-	-	7e-1	At3g26430	GDSL-motif lipase/hydrolase family protein	O.I.	H.G.	S.X.
0.40	53.1	0.94	Contig18365_at	Contig18365	-	-	1e+0	At1g31760	SWIB complex BAF60b domain-containing protein	O.I.	H.G.	S.X.
0.40	53.1	0.94	Contig7940_s_at	Contig7940	-	-	9e-43	At4g25550	protein binding	O.I.	H.G.	S.X.
0.40	53.1	0.95	Contig7694_at	Contig7694	-	-	1e+0	At5g59780	MYB59 (MYB DOMAIN PROTEIN 59)	O.I.	H.G.	S.X.
0.36	47.1	0.91	Contig12113_at	Contig12113	-	-	4e-5	At4g24890	PAP24 (PURPLE ACID PHOSPHATASE 24)	O.I.	H.G.	S.X.
0.36	47.1	0.93	Contig16259_at	Contig16259	-	-	5e+0	At5g56600	PRF3 (PROFILIN 3)	O.I.	H.G.	S.X.
0.36	47.1	0.94	Contig14021_at	Contig14021	-	-	4e-2	At3g59300	unknown protein	O.I.	H.G.	S.X.
0.35	45.1	0.90	Contig13166_at	Contig13166	-	-	2e+0	At2g01670	atnudt17 (Arabidopsis thaliana Nudix hydrolase homolog 17)	O.I.	H.G.	S.X.
0.33	42.6	0.92	Contig19854_at	Contig19854	-	-	2e+0	At2g40085	unknown protein	O.I.	H.G.	S.X.
0.33	42.6	0.92	Contig4245_s_at	Contig4245	-	-	1e-13	At2g48150	ATGPX4 (GLUTATHIONE PEROXIDASE 4)	O.I.	H.G.	S.X.
0.33	42.6	0.93	Contig4952_x_at	Contig4952	-	-	1e-1	At5g50200	WR3 (WOUND-RESPONSIVE 3)	O.I.	H.G.	S.X.
0.33	42.6	0.95	Contig7941_s_at	Contig7941	-	-	2e+0	At3g28950	avirulence-responsive protein-related / avirulence induced gene (AIG) protein-related	O.I.	H.G.	S.X.
0.33	42.6	0.96	Contig9191_at	Contig9191	-	-	2e+0	At2g18200	unknown protein	O.I.	H.G.	S.X.
0.31	38.6	0.92	HS14H16r_s_at	HS14H16r	-	-	2e+0	At3g56020	60S ribosomal protein L41 (RPL41G)	O.I.	H.G.	S.X.
0.31	38.6	0.94	Contig23235_at	Contig23235	-	-	6e-1	At1g09470	unknown protein	O.I.	H.G.	S.X.
0.31	38.6	0.95	Contig11108_at	Contig11108	-	-	8e-4	At3g05545	transcription factor, putative / zinc finger (C3HC4 type RING finger) family protein	O.I.	H.G.	S.X.
0.30	37.0	0.94	Contig19815_at	Contig19815	-	-	7e+0	At5g42850	-	O.I.	H.G.	S.X.
0.29	35.5	0.93	Contig9341_at	Contig9341	-	-	2e-25	At1g30450	CCC1 (CATION-CHLORIDE CO-TRANSPORTER 1)	O.I.	H.G.	S.X.
0.29	35.5	0.94	Contig17594_at	Contig17594	-	-	2e+0	At4g11300	unknown protein	O.I.	H.G.	S.X.
0.29	35.5	0.95	HV_CEb0017I15r2_at	HV_CEb0017I15r2	-	-	8e-1	At1g68760	ATNUDX1 (ARABIDOPSIS THALIANA NUDIX HYDROLASE 1)	O.I.	H.G.	S.X.
0.28	35.5	0.93	Contig6137_at	Contig6137	-	-	3e-7	At2g34190	xanthine/uracil permease family protein	O.I.	H.G.	S.X.
0.27	32.1	0.94	Contig15078_at	Contig15078	-	-	5e+0	At5g59105	-	O.I.	H.G.	S.X.
0.27	32.1	0.90	HY08N07u_at	HY08N07u	-	-	4e+0	At3g28870	-	O.I.	H.G.	S.X.
0.27	32.1	0.92	Contig18115_at	Contig18115	-	-	2e-2	At5g48920	TED7 (TRACHEARY ELEMENT DIFFERENTIATION-RELATED 7)	O.I.	H.G.	S.X.
0.27	32.1	0.94	Contig16931_at	Contig16931	-	-	2e+0	At3g06050	PRXIIF (PEROXIREDOXIN IIF)	O.I.	H.G.	S.X.
0.27	32.1	0.95	Contig7746_at	Contig7746	-	-	2e+0	At5g48950	thioesterase family protein	O.I.	H.G.	S.X.
0.26	30.4	0.91	HVSMEf0001H14r2_at	HVSMEf0001H14r2	-	-	3e+0	At1g50490	UBC20 (ubiquitin-conjugating enzyme 20)	O.I.	H.G.	S.X.
0.25	28.9	0.90	Contig10498_at	Contig10498	L-galactose dehydrogenase	-	4e-8	At4g33670	L-galactose dehydrogenase (L-GalDH)	O.I.	H.G.	S.X.
0.25	28.9	0.92	Contig1604_at	Contig1604	-	-	1e-10	At1g06680	PSBP-1 (PHOTOSYSTEM II SUBUNIT P-1)	O.I.	H.G.	S.X.
0.25	28.9	0.95	Contig19174_at	Contig19174	-	-	4e-1	At2g26970	exonuclease family protein	O.I.	H.G.	S.X.
0.25	28.9	0.95	Contig4722_at	Contig4722	-	-	5e-21	At5g41010	NRPB12	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
63.5 100.0 GSM238412 Endosperm 4DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
6.5 98.2 GSM440966 Stressed palea_Rep1 GSE17669 Gene expression in the barley spike during drought stress
5.1 97.3 GSM440960 Stressed lemma_Rep1 GSE17669 Gene expression in the barley spike during drought stress
5.1 97.3 GSM398251 Martin_0d_rep3 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.9 97.1 GSM440968 Stressed palea_Rep3 GSE17669 Gene expression in the barley spike during drought stress
4.1 96.2 GSM238413 Endosperm 4DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
4.0 96.0 GSM440972 Stressed awn_Rep1 GSE17669 Gene expression in the barley spike during drought stress
4.0 96.0 GSM440962 Stressed lemma_Rep3 GSE17669 Gene expression in the barley spike during drought stress
3.9 95.8 GSM282040 Malting_kilned_Morex_rep2 GSE11200 Expression data from malting barley seeds
3.8 95.7 GSM398264 HS41-1_1d_rep1 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
63.5	100.0	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.5	98.2	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
5.1	97.3	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
5.1	97.3	GSM398251	Martin_0d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.9	97.1	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
4.1	96.2	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.0	96.0	GSM440972	Stressed awn_Rep1	GSE17669	Gene expression in the barley spike during drought stress
4.0	96.0	GSM440962	Stressed lemma_Rep3	GSE17669	Gene expression in the barley spike during drought stress
3.9	95.8	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.8	95.7	GSM398264	HS41-1_1d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Contig5626_s_at
Gene name
Homology with Arabidopsis	Similar to At5g50260: cysteine proteinase, putative (HF=2e+0)
Module size	6 genes
NF	0.57
%ile	78.5

Co-expression analysis

Gene ID Contig5626_s_at Gene name Homology with ArabidopsisSimilar to At5g50260: cysteine proteinase, putative (HF=2e+0) Module size 6 genes NF 0.57 %ile 78.5

Co-expressed genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Contig5626_s_at

Gene name
Homology with Arabidopsis Similar to At5g50260: cysteine proteinase, putative (HF=2e+0)

Module size 6 genes

NF 0.57

%ile 78.5

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays