Co-expression analysis

Gene ID	Contig5626_s_at
Gene name
Homology with Arabidopsis	Similar to At5g50260: cysteine proteinase, putative (HF=2e+0)
Module size	6 genes
NF	0.57
%ile	78.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	92.5	0.95	Contig5626_s_at	Contig5626	-	-	2e+0	At5g50260	cysteine proteinase, putative	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.96	Contig13522_at	Contig13522	-	-	4e-17	At4g02630	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.95	Contig7940_x_at	Contig7940	-	-	9e-43	At4g25550	protein binding	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.96	Contig10540_at	Contig10540	-	-	7e-8	At3g57890	tubulin-specific chaperone C-related	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.96	Contig15831_at	Contig15831	-	-	1e+0	At3g15190	chloroplast 30S ribosomal protein S20, putative	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.96	Contig13711_at	Contig13711	-	-	2e+0	At3g22942	AGG2 (G-PROTEIN GAMMA SUBUNIT 2)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
63.5	100.0	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.5	98.2	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
5.1	97.3	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
5.1	97.3	GSM398251	Martin_0d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.9	97.1	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
4.1	96.2	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.0	96.0	GSM440972	Stressed awn_Rep1	GSE17669	Gene expression in the barley spike during drought stress
4.0	96.0	GSM440962	Stressed lemma_Rep3	GSE17669	Gene expression in the barley spike during drought stress
3.9	95.8	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.8	95.7	GSM398264	HS41-1_1d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

Inter-species module comparison

A co-expression module including the grape gene, 1620844_at, orthologous to the query gene, Contig5626_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	89.5	1620844_at	At5g50260	hypothetical protein LOC100264473	-	3e-14	At5g50260	cysteine proteinase, putative	O.I.	H.G.	S.X.	Please select
0.92	99.0	1613470_at	At5g50260	hypothetical protein LOC100254431	-	7e-5	At5g07500	PEI1	O.I.	H.G.	S.X.	Please select
0.92	99.0	1612730_at	At5g50260	similar to seed specific protein Bn15D18B	-	2e+0	At4g33550	lipid binding	O.I.	H.G.	S.X.	Please select
0.80	93.6	1608743_at	At5g50260	-	-	2e+0	At4g08230	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.77	92.3	1616160_a_at	At5g50260	hypothetical protein LOC100261550	-	6e-10	At4g25810	XTR6 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 6)	O.I.	H.G.	S.X.	Please select
0.71	89.5	1608617_at	At5g50260	hypothetical protein LOC100253171	-	9e-3	At3g55646	unknown protein	O.I.	H.G.	S.X.	Please select
0.63	84.3	1618848_at	At5g50260	hypothetical protein LOC100261550	-	6e-10	At4g25810	XTR6 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 6)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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