Co-expression analysis

Gene ID Contig5626_s_at
Gene name
Homology with ArabidopsisSimilar to At5g50260: cysteine proteinase, putative (HF=2e+0)
Module size 6 genes
NF 0.57
%ile 78.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8092.50.95Contig5626_s_atContig5626--2e+0At5g50260cysteine proteinase, putativeO.I.H.G.S.X.
0.6784.70.96Contig13522_atContig13522--4e-17At4g02630protein kinase family proteinO.I.H.G.S.X.
0.4661.00.95Contig7940_x_atContig7940--9e-43At4g25550protein bindingO.I.H.G.S.X.
0.4661.00.96Contig10540_atContig10540--7e-8At3g57890tubulin-specific chaperone C-relatedO.I.H.G.S.X.
0.4053.10.96Contig15831_atContig15831--1e+0At3g15190chloroplast 30S ribosomal protein S20, putativeO.I.H.G.S.X.
0.3647.10.96Contig13711_atContig13711--2e+0At3g22942AGG2 (G-PROTEIN GAMMA SUBUNIT 2)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
63.5100.0GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.598.2GSM440966Stressed palea_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
5.197.3GSM440960Stressed lemma_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
5.197.3GSM398251Martin_0d_rep3GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
4.997.1GSM440968Stressed palea_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
4.196.2GSM238413Endosperm 4DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.096.0GSM440972Stressed awn_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
4.096.0GSM440962Stressed lemma_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
3.995.8GSM282040Malting_kilned_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
3.895.7GSM398264HS41-1_1d_rep1GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os08g0556900, orthologous to the query gene, Contig5626_s_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8395.8Os08g0556900At5g50260-Cysteine proteinase (EC 3.4.22.-)1e-2At5g50260cysteine proteinase, putativeO.I.H.G.S.X.
0.8395.8Os03g0370400At5g50260-Protein of unknown function DUF679 family protein1e-1At5g27370unknown proteinO.I.H.G.S.X.
0.6079.7Os11g0134700At5g50260-Latex-abundant protein3e+0At3g06790plastid developmental protein DAG, putativeO.I.H.G.S.X.
0.5068.0Os02g0114200At5g50260-Serine carboxypeptidase III precursor (EC3.4.16.5)3e-10At3g45010scpl48 (serine carboxypeptidase-like 48)O.I.H.G.S.X.
0.4458.1Os07g0679300At5g50260-Alpha-galactosidase precursor (EC 3.2.1.22)(Melibiase) (Alpha-D- galactoside galactohydrolase)6e-54At3g56310alpha-galactosidase, putative / melibiase, putative / alpha-D-galactoside galactohydrolase, putativeO.I.H.G.S.X.
0.127.2Os04g0311400At5g50260-Cysteine proteinase 1 precursor (EC 3.4.22.-)3e-13At4g39090RD19 (RESPONSIVE TO DEHYDRATION 19)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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