Co-expression analysis

Gene ID	Contig5609_at
Gene name
Homology with Arabidopsis	Similar to At2g01905: CYCJ18 (CYCLIN J18) (HF=5e+0)
Module size	6 genes
NF	0.49
%ile	69.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	87.1	0.90	Contig5609_at	Contig5609	-	-	5e+0	At2g01905	CYCJ18 (CYCLIN J18)	O.I.	H.G.	S.X.	Please select
0.71	87.1	0.89	Contig5607_s_at	Contig5607	-	-	4e-1	At3g17160	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.91	Contig2163_at	Contig2163	-	-	3e-1	At2g04046	-	O.I.	H.G.	S.X.	Please select
0.48	63.2	0.90	Contig17124_at	Contig17124	-	-	6e-1	At3g20180	metal ion binding	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.90	HVSMEc0009P17f_s_at	HVSMEc0009P17f	-	-	1e-2	At3g10280	KCS14 (3-KETOACYL-COA SYNTHASE 14)	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.90	Contig14575_at	Contig14575	-	-	7e-26	At4g38040	exostosin family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.5	98.6	GSM261025	ABA-Early-rep2	GSE10328	ABA experiment
5.4	97.5	GSM372955	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.7	96.9	GSM372969	genotype: Mla6 - pathogen isolates: K1 - time: 24 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.7	96.9	GSM372968	genotype: Mla6 - pathogen isolates: K1 - time: 24 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.7	96.9	GSM372946	genotype: Mla6 - pathogen isolates: 5874 - time: 16 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.5	96.7	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.5	96.7	GSM372971	genotype: Mla6 - pathogen isolates: K1 - time: 32 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.5	96.7	GSM372950	genotype: Mla6 - pathogen isolates: 5874 - time: 24 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.2	96.3	GSM372954	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.1	96.2	GSM261027	ABA-Late-rep1	GSE10328	ABA experiment

Inter-species module comparison

A co-expression module including the wheat gene, Ta.12303.1.S1_at, orthologous to the query gene, Contig5609_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.96	99.3	Ta.12303.1.S1_at	At2g01905	-	-	2e+1	At5g10220	ANN6 (ANNEXIN ARABIDOPSIS 6)	O.I.	H.G.	S.X.	Please select
0.42	60.9	TaAffx.114422.1.S1_at	At2g01905	-	-	5e+0	At5g09960	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	42.7	Ta.2848.1.S1_at	At2g01905	-	-	1e-7	At5g64350	FKBP12 (FK506-BINDING PROTEIN)	O.I.	H.G.	S.X.	Please select
0.30	40.9	Ta.3400.1.S1_at	At2g01905	-	-	2e-2	At3g06180	structural constituent of ribosome	O.I.	H.G.	S.X.	Please select
0.28	39.2	Ta.607.1.S1_x_at	At2g01905	-	-	1e-7	At5g08565	positive transcription elongation factor/ zinc ion binding	O.I.	H.G.	S.X.	Please select
0.28	39.2	Ta.30714.1.S1_at	At2g01905	-	-	1e+0	At5g17500	glycosyl hydrolase family 5 protein / cellulase family protein	O.I.	H.G.	S.X.	Please select
0.27	35.6	Ta.3262.1.S1_at	At2g01905	k12B20.15 protein	-	2e-31	At5g37680	ATARLA1A (ADP-ribosylation factor-like A1A)	O.I.	H.G.	S.X.	Please select
0.26	33.6	Ta.562.1.S1_a_at	At2g01905	-	-	1e-41	At2g19790	clathrin adaptor complex small chain family protein	O.I.	H.G.	S.X.	Please select
0.26	33.6	Ta.21149.1.S1_at	At2g01905	-	-	8e-6	At1g02680	TAF13 (TBP-ASSOCIATED FACTOR 13)	O.I.	H.G.	S.X.	Please select
0.23	29.0	Ta.3559.1.S1_at	At2g01905	-	-	3e-9	At1g15080	LPP2 (LIPID PHOSPHATE PHOSPHATASE 2)	O.I.	H.G.	S.X.	Please select
0.21	25.5	Ta.13765.1.S1_s_at	At2g01905	DNA-binding protein S1FA	-	6e-6	At2g37120	DNA-binding S1FA family protein	O.I.	H.G.	S.X.	Please select
0.21	25.5	Ta.2848.1.S1_x_at	At2g01905	-	-	1e-7	At5g64350	FKBP12 (FK506-BINDING PROTEIN)	O.I.	H.G.	S.X.	Please select
0.19	22.4	Ta.21403.1.S1_at	At2g01905	-	-	2e-10	At5g61500	ATG3	O.I.	H.G.	S.X.	Please select
0.18	21.0	Ta.27454.2.S1_at	At2g01905	Cyclophilin	-	3e-14	At2g29960	CYP5 (CYCLOPHILIN 5)	O.I.	H.G.	S.X.	Please select
0.18	21.0	Ta.1902.2.S1_a_at	At2g01905	-	-	3e-4	At5g36230	eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein	O.I.	H.G.	S.X.	Please select
0.15	17.1	Ta.643.1.A1_at	At2g01905	-	-	7e-1	At2g18328	ATRL4 (ARABIDOPSIS RAD-LIKE 4)	O.I.	H.G.	S.X.	Please select
0.15	17.1	Ta.3228.1.S1_a_at	At2g01905	-	-	4e-14	At1g14300	binding	O.I.	H.G.	S.X.	Please select
0.14	15.8	TaAffx.108368.1.S1_x_at	At2g01905	-	-	2e-22	At1g14320	SAC52 (SUPPRESSOR OF ACAULIS 52)	O.I.	H.G.	S.X.	Please select
0.13	14.6	Ta.3800.1.S1_at	At2g01905	-	-	2e-1	At1g07950	surfeit locus protein 5 family protein / SURF5 family protein	O.I.	H.G.	S.X.	Please select
0.12	13.3	Ta.22913.1.S1_at	At2g01905	-	-	1e+1	At5g61200	-	O.I.	H.G.	S.X.	Please select
0.10	11.3	Ta.7610.1.S1_a_at	At2g01905	-	-	1e-6	At5g11560	catalytic	O.I.	H.G.	S.X.	Please select
0.09	10.4	Ta.7586.1.S1_at	At2g01905	-	-	1e-4	At1g10590	DNA-binding protein-related	O.I.	H.G.	S.X.	Please select
0.03	4.7	Ta.23807.7.S1_at	At2g01905	-	-	0	At5g02500	HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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