Co-expression analysis

Gene ID	Contig5609_at
Gene name
Homology with Arabidopsis	Similar to At2g01905: CYCJ18 (CYCLIN J18) (HF=5e+0)
Module size	6 genes
NF	0.49
%ile	69.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	87.1	0.90	Contig5609_at	Contig5609	-	-	5e+0	At2g01905	CYCJ18 (CYCLIN J18)	O.I.	H.G.	S.X.	Please select
0.71	87.1	0.89	Contig5607_s_at	Contig5607	-	-	4e-1	At3g17160	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.91	Contig2163_at	Contig2163	-	-	3e-1	At2g04046	-	O.I.	H.G.	S.X.	Please select
0.48	63.2	0.90	Contig17124_at	Contig17124	-	-	6e-1	At3g20180	metal ion binding	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.90	HVSMEc0009P17f_s_at	HVSMEc0009P17f	-	-	1e-2	At3g10280	KCS14 (3-KETOACYL-COA SYNTHASE 14)	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.90	Contig14575_at	Contig14575	-	-	7e-26	At4g38040	exostosin family protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.5	98.6	GSM261025	ABA-Early-rep2	GSE10328	ABA experiment
5.4	97.5	GSM372955	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.7	96.9	GSM372969	genotype: Mla6 - pathogen isolates: K1 - time: 24 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.7	96.9	GSM372968	genotype: Mla6 - pathogen isolates: K1 - time: 24 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.7	96.9	GSM372946	genotype: Mla6 - pathogen isolates: 5874 - time: 16 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.5	96.7	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.5	96.7	GSM372971	genotype: Mla6 - pathogen isolates: K1 - time: 32 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.5	96.7	GSM372950	genotype: Mla6 - pathogen isolates: 5874 - time: 24 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.2	96.3	GSM372954	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.1	96.2	GSM261027	ABA-Late-rep1	GSE10328	ABA experiment

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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