Co-expression analysis

Gene ID	Contig5587_at
Gene name
Homology with Arabidopsis	Similar to At2g30130: ASL5 (HF=8e-1)
Module size	31 genes
NF	0.79
%ile	96.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.90	95.7	0.95	Contig5587_at	Contig5587	-	-	8e-1	At2g30130	ASL5	O.I.	H.G.	S.X.	Please select
0.87	95.0	0.94	Contig6677_s_at	Contig6677	-	-	1e-1	At5g17510	unknown protein	O.I.	H.G.	S.X.	Please select
0.87	95.0	0.96	HVSMEa0009A11r2_at	HVSMEa0009A11r2	-	-	1e-2	At4g32530	vacuolar ATP synthase, putative / V-ATPase, putative	O.I.	H.G.	S.X.	Please select
0.87	95.0	0.95	Contig4386_at	Contig4386	-	-	5e-2	At5g50470	NF-YC7 (NUCLEAR FACTOR Y, SUBUNIT C7)	O.I.	H.G.	S.X.	Please select
0.85	94.5	0.95	Contig5684_at	Contig5684	-	-	2e+0	At5g49940	NFU2 (NIFU-LIKE PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.85	94.5	0.96	Contig10093_s_at	Contig10093	-	-	2e-3	At1g74970	RPS9 (RIBOSOMAL PROTEIN S9)	O.I.	H.G.	S.X.	Please select
0.84	94.3	0.97	Contig4217_at	Contig4217	-	-	3e-71	At5g03290	isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putative	O.I.	H.G.	S.X.	Please select
0.84	94.3	0.96	Contig6938_at	Contig6938	-	-	1e+0	At1g45145	ATTRX5	O.I.	H.G.	S.X.	Please select
0.83	94.0	0.95	Contig8125_at	Contig8125	-	-	4e-1	At5g11930	glutaredoxin family protein	O.I.	H.G.	S.X.	Please select
0.83	94.0	0.96	Contig10358_at	Contig10358	-	-	8e-1	At5g67580	TRB2	O.I.	H.G.	S.X.	Please select
0.82	93.1	0.94	Contig10142_at	Contig10142	-	-	1e-1	At1g12665	-	O.I.	H.G.	S.X.	Please select
0.82	93.1	0.96	Contig3663_at	Contig3663	-	-	2e+0	At3g04640	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.82	93.1	0.95	Contig5527_at	Contig5527	-	-	2e-4	At3g16910	AAE7 (ACYL-ACTIVATING ENZYME 7)	O.I.	H.G.	S.X.	Please select
0.81	92.8	0.94	Contig10093_at	Contig10093	-	-	2e-3	At1g74970	RPS9 (RIBOSOMAL PROTEIN S9)	O.I.	H.G.	S.X.	Please select
0.80	92.5	0.95	Contig5105_at	Contig5105	-	-	8e-9	At3g26060	ATPRX Q	O.I.	H.G.	S.X.	Please select
0.79	91.4	0.96	Contig4444_at	Contig4444	-	-	3e-3	At2g40960	nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.79	91.4	0.95	Contig5776_s_at	Contig5776	-	-	3e-1	At1g24735	O-methyltransferase	O.I.	H.G.	S.X.	Please select
0.79	91.4	0.95	Contig7579_at	Contig7579	-	-	1e-57	At3g03940	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.78	91.2	0.93	Contig5009_at	Contig5009	-	-	9e-18	At5g59890	ADF4 (ACTIN DEPOLYMERIZING FACTOR 4)	O.I.	H.G.	S.X.	Please select
0.76	89.8	0.95	Contig5496_at	Contig5496	-	-	3e-3	At3g44190	pyridine nucleotide-disulphide oxidoreductase family protein	O.I.	H.G.	S.X.	Please select
0.76	89.8	0.95	Contig8956_at	Contig8956	-	-	7e-3	At1g64900	CYP89A2 (CYTOCHROME P450 89A2)	O.I.	H.G.	S.X.	Please select
0.75	89.5	0.95	Contig6150_at	Contig6150	-	-	3e-2	At3g56290	unknown protein	O.I.	H.G.	S.X.	Please select
0.74	89.1	0.94	Contig8084_at	Contig8084	-	-	1e-7	At1g32990	PRPL11 (PLASTID RIBOSOMAL PROTEIN L11)	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.95	Contig6819_at	Contig6819	-	-	8e-13	At5g05820	phosphate translocator-related	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.95	Contig13273_at	Contig13273	-	-	7e-19	At1g55270	kelch repeat-containing F-box family protein	O.I.	H.G.	S.X.	Please select
0.72	87.4	0.96	Contig570_s_at	Contig570	-	-	3e-23	At1g09200	histone H3	O.I.	H.G.	S.X.	Please select
0.71	87.1	0.96	Contig9440_s_at	Contig9440	-	-	4e-4	At3g18760	ribosomal protein S6 family protein	O.I.	H.G.	S.X.	Please select
0.69	85.5	0.95	Contig106_x_at	Contig106	-	-	4e-16	At4g40040	histone H3.2	O.I.	H.G.	S.X.	Please select
0.62	79.1	0.95	Contig1943_at	Contig1943	-	-	3e-5	At5g13510	ribosomal protein L10 family protein	O.I.	H.G.	S.X.	Please select
0.62	79.1	0.95	HVSMEn0024L14r2_at	HVSMEn0024L14r2	-	-	6e-1	At3g04170	germin-like protein, putative	O.I.	H.G.	S.X.	Please select
0.59	75.8	0.95	Contig5777_at	Contig5777	-	-	3e-11	At5g47570	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.0	96.0	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
3.3	94.6	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.3	94.6	GSM261032	Dicktoo control-rep3	GSE10329	Low temperature stress in cv. Dicktoo
3.1	94.1	GSM261021	ABA-Control-rep1	GSE10328	ABA experiment
2.9	93.4	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.9	93.4	GSM160815	drought control rep3	GSE6990	Barley drought stress
2.9	93.4	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.8	93.1	GSM261036	Dicktoo-subzero-rep1	GSE10329	Low temperature stress in cv. Dicktoo
2.8	93.1	GSM161200	cold treatment rep1	GSE6993	Barley low temperature stress
2.6	92.3	GSM261072	Albina f-17 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage