Co-expression analysis

Gene ID Contig5537_at
Gene name
Homology with ArabidopsisSimilar to At1g11260: STP1 (SUGAR TRANSPORTER 1) (HF=1e-12)
Module size 6 genes
NF 0.34
%ile 46.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.91Contig5537_atContig5537--1e-12At1g11260STP1 (SUGAR TRANSPORTER 1)O.I.H.G.S.X.
0.6178.70.92Contig15584_atContig15584--1e-4At3g23480cyclopropane fatty acid synthase-relatedO.I.H.G.S.X.
0.5369.70.92Contig18661_atContig18661--5e+0At3g17675copper ion binding / electron carrierO.I.H.G.S.X.
0.2528.90.92Contig18687_atContig18687--2e-2At5g16390CAC1 (CHLOROPLASTIC ACETYLCOENZYME A CARBOXYLASE 1)O.I.H.G.S.X.
0.2326.10.92Contig14605_atContig14605--1e-8At4g33650DRP3A (DYNAMIN-RELATED PROTEIN 3A)O.I.H.G.S.X.
0.1818.20.89Contig10732_s_atContig10732--4e+0At2g21640-O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
22.699.8GSM238417Endosperm 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
8.398.8GSM238416Endosperm 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
8.098.7GSM440979Stressed seed_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO
7.398.5GSM440980Stressed seed_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
5.797.7GSM382234Root_Hg3GSE15295Mercury toxicity in barley rootsLink to GEO
5.397.4GSM3634645 mM B(OH)3 treatment (5B) - rep2GSE14521Late response to boron toxicity in barley leavesLink to GEO
4.796.9GSM419982Seed_Rep2GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
4.796.9GSM440976Control seed_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO
4.796.9GSM3634635 mM B(OH)3 treatment (5B) - rep1GSE14521Late response to boron toxicity in barley leavesLink to GEO
4.696.8GSM1611487% SWC rep3GSE6990Barley drought stressLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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