Co-expression analysis

Gene ID Contig5496_at
Gene name
Homology with ArabidopsisSimilar to At3g44190: pyridine nucleotide-disulphide oxidoreductase family protein (HF=3e-3)
Module size 6 genes
NF 0.55
%ile 76.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.97Contig5496_atContig5496--3e-3At3g44190pyridine nucleotide-disulphide oxidoreductase family proteinO.I.H.G.S.X.
0.6784.70.97Contig6150_atContig6150--3e-2At3g56290unknown proteinO.I.H.G.S.X.
0.5774.90.97Contig4444_atContig4444--3e-3At2g40960nucleic acid bindingO.I.H.G.S.X.
0.4458.90.97Contig6938_atContig6938--1e+0At1g45145ATTRX5O.I.H.G.S.X.
0.4053.10.98Contig5105_atContig5105--8e-9At3g26060ATPRX QO.I.H.G.S.X.
0.3647.10.97Contig570_s_atContig570--3e-23At1g09200histone H3O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.297.4GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.795.5GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.494.8GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
2.390.9GSM440960Stressed lemma_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
2.390.9GSM261079Albina e-16 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.290.3GSM261073Albina f-17 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.290.3GSM238435Embryo 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.189.7GSM261068Albina f-17 Control rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.189.7GSM382235Root_Control1GSE15295Mercury toxicity in barley rootsLink to GEO
2.089.0GSM261069Albina f-17 Control rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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