Co-expression analysis

Gene ID Contig5492_at
Gene name
Homology with ArabidopsisSimilar to At3g44890: RPL9 (RIBOSOMAL PROTEIN L9) (HF=1e-7)
Module size 6 genes
NF 0.79
%ile 96.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.98Contig5492_atContig5492--1e-7At3g44890RPL9 (RIBOSOMAL PROTEIN L9)O.I.H.G.S.X.
0.8394.00.98Contig5260_s_atContig5260--0At2g29630THIC (ThiaminC)O.I.H.G.S.X.
0.8092.50.98Contig7652_atContig7652--3e-3At3g56660BZIP49 (BASIC REGION/LEUCINE ZIPPER MOTIF PROTEIN 49)O.I.H.G.S.X.
0.6784.70.96Contig5301_atContig5301--1e-43At4g38130HD1 (HISTONE DEACETYLASE 1)O.I.H.G.S.X.
0.6784.70.98Contig3018_atContig3018--2e+0At4g14630GLP9 (GERMIN-LIKE PROTEIN 9)O.I.H.G.S.X.
0.5774.90.98Contig20916_atContig20916--3e-1At5g66160JR700O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7790.80.96Contig6904_atContig6904--3e-41At3g11670DGD1 (DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1)O.I.H.G.S.X.
0.7790.80.97Contig5182_atContig5182--9e-34At4g12590unknown proteinO.I.H.G.S.X.
0.6380.30.95HVSMEm0022B10r2_atHVSMEm0022B10r2--8e+0At3g05193unknown proteinO.I.H.G.S.X.
0.5774.90.97Contig5241_atContig5241--8e-2At5g08790ATAF2O.I.H.G.S.X.
0.5674.30.96Contig3992_atContig3992--1e-40At1g14670endomembrane protein 70, putativeO.I.H.G.S.X.
0.5369.70.97Contig18164_atContig18164--1e-11At1g20920DEAD box RNA helicase, putativeO.I.H.G.S.X.
0.5066.90.97Contig5232_atContig5232--2e-30At1g69620RPL34 (RIBOSOMAL PROTEIN L34)O.I.H.G.S.X.
0.4356.40.92Contig7933_atContig7933--5e-1At5g4854033 kDa secretory protein-relatedO.I.H.G.S.X.
0.4255.20.86Contig5403_atContig5403--1e-51At1g30510ATRFNR2 (ROOT FNR 2)O.I.H.G.S.X.
0.4153.90.94Contig5662_atContig5662--3e-1At1g49975unknown proteinO.I.H.G.S.X.
0.4053.10.92S0001000056K18F1_x_atS0001000056K18F1--7e-1At1g77440PBC2O.I.H.G.S.X.
0.3849.50.94HA22G05r_atHA22G05r--9e+0At5g26692-O.I.H.G.S.X.
0.3647.10.80S0001100181F11F1_atS0001100181F11F1--1e+1At4g11060MTSSB (mitochondrially targeted single-stranded DNA binding protein)O.I.H.G.S.X.
0.3647.10.93Contig25403_atContig25403--4e+0At2g21060ATGRP2B (GLYCINE-RICH PROTEIN 2B)O.I.H.G.S.X.
0.3545.10.94Contig5460_s_atContig5460--8e-3At1g04850ubiquitin-associated (UBA)/TS-N domain-containing proteinO.I.H.G.S.X.
0.3342.60.92Contig16646_atContig16646--6e-17At2g24990RIO1 family proteinO.I.H.G.S.X.
0.3342.60.93Contig3903_x_atContig3903hypothetical protein LOC732694-3e+0At1g65150meprin and TRAF homology domain-containing protein / MATH domain-containing proteinO.I.H.G.S.X.
0.3342.60.94Contig14065_atContig14065--6e-8At5g49770leucine-rich repeat transmembrane protein kinase, putativeO.I.H.G.S.X.
0.3240.30.93HVSMEm0017H04r2_atHVSMEm0017H04r2--6e-2At1g7427060S ribosomal protein L35a (RPL35aC)O.I.H.G.S.X.
0.3240.30.95Contig26171_atContig26171--2e+0At1g52580ATRBL5 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 5)O.I.H.G.S.X.
0.3240.30.93S0001100050A08F1_x_atS0001100050A08F1--6e-1At1g77440PBC2O.I.H.G.S.X.
0.3138.60.92HB04N02r_x_atHB04N02r--1e+1At5g44570unknown proteinO.I.H.G.S.X.
0.3138.60.89Contig5852_atContig5852--7e-7At1g17650GLYR2 (GLYOXYLATE REDUCTASE 2)O.I.H.G.S.X.
0.3138.60.89HB14C23r_s_atHB14C23r--7e-1At2g47880glutaredoxin family proteinO.I.H.G.S.X.
0.3138.60.93HA22G05r_x_atHA22G05r--9e+0At5g26692-O.I.H.G.S.X.
0.3037.00.95Contig7079_atContig7079--3e-3At2g18980peroxidase, putativeO.I.H.G.S.X.
0.2935.50.86Contig12782_atContig12782--4e-5At5g20550oxidoreductase, 2OG-Fe(II) oxygenase family proteinO.I.H.G.S.X.
0.2935.50.79Contig25475_atContig25475--5e+0At1g20520unknown proteinO.I.H.G.S.X.
0.2935.50.89HA28N02r_s_atHA28N02r--1e-8At2g23810TET8 (TETRASPANIN8)O.I.H.G.S.X.
0.2935.50.94Contig25706_atContig25706--3e-1At2g37000TCP family transcription factor, putativeO.I.H.G.S.X.
0.2935.50.94Contig3147_atContig3147--3e-4At1g09940HEMA2O.I.H.G.S.X.
0.2935.50.95Contig22208_atContig22208--2e+0At1g02330-O.I.H.G.S.X.
0.2835.50.86HVSMEl0002P16r2_atHVSMEl0002P16r2--6e+0At2g09838unknown proteinO.I.H.G.S.X.
0.2835.50.95Contig18000_atContig18000knotted 1-1e-33At1g62360STM (SHOOT MERISTEMLESS)O.I.H.G.S.X.
0.2732.10.83Contig7851_s_atContig7851--3e-1At2g28720histone H2B, putativeO.I.H.G.S.X.
0.2630.40.94Contig23108_atContig23108--8e-1At3g16280DNA binding / transcription factorO.I.H.G.S.X.
0.2630.40.85HB20B24r_s_atHB20B24r--8e+0At4g29340PRF4 (PROFILIN 4)O.I.H.G.S.X.
0.2630.40.93Contig3198_atContig3198--6e+0At5g25940early nodulin-relatedO.I.H.G.S.X.
0.2528.90.87Contig24511_atContig24511--8e+0At5g13880unknown proteinO.I.H.G.S.X.
0.2528.90.92Contig21607_atContig21607--2e+1At5g50710unknown proteinO.I.H.G.S.X.
0.2528.90.93Contig10718_atContig10718--2e-7At1g78440ATGA2OX1 (gibberellin 2-oxidase 1)O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.498.1GSM146368Maythorpe Root Salt, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
5.397.4GSM146362Golden Promise Root Salt, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
5.197.3GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
5.197.3GSM146367Maythorpe Root Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
4.897.0GSM71139OWB-D stress replicate 1GSE3170 Barley single feature polymorphisms and drought stress gene expressionLink to GEO
4.696.8GSM146359Golden Promise Root Control, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
4.396.4GSM146365Maythorpe Root Control, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
4.196.2GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.895.7GSM71152Barke stress and unstress replicate 3GSE3170 Barley single feature polymorphisms and drought stress gene expressionLink to GEO
3.895.7GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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