CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig5492_at

Gene name
Homology with Arabidopsis Similar to At3g44890: RPL9 (RIBOSOMAL PROTEIN L9) (HF=1e-7)

Module size 6 genes

NF 0.79

%ile 96.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 0.98 Contig5492_at Contig5492 - - 1e-7 At3g44890 RPL9 (RIBOSOMAL PROTEIN L9) O.I. H.G. S.X.
0.83 94.0 0.98 Contig5260_s_at Contig5260 - - 0 At2g29630 THIC (ThiaminC) O.I. H.G. S.X.
0.80 92.5 0.98 Contig7652_at Contig7652 - - 3e-3 At3g56660 BZIP49 (BASIC REGION/LEUCINE ZIPPER MOTIF PROTEIN 49) O.I. H.G. S.X.
0.67 84.7 0.96 Contig5301_at Contig5301 - - 1e-43 At4g38130 HD1 (HISTONE DEACETYLASE 1) O.I. H.G. S.X.
0.67 84.7 0.98 Contig3018_at Contig3018 - - 2e+0 At4g14630 GLP9 (GERMIN-LIKE PROTEIN 9) O.I. H.G. S.X.
0.57 74.9 0.98 Contig20916_at Contig20916 - - 3e-1 At5g66160 JR700 O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.4 98.1 GSM146368 Maythorpe Root Salt, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.3 97.4 GSM146362 Golden Promise Root Salt, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.1 97.3 GSM261046 after 3 days in mannitol medium rep2 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.1 97.3 GSM146367 Maythorpe Root Salt, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.8 97.0 GSM71139 OWB-D stress replicate 1 GSE3170 Barley single feature polymorphisms and drought stress gene expression
4.6 96.8 GSM146359 Golden Promise Root Control, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.3 96.4 GSM146365 Maythorpe Root Control, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.1 96.2 GSM261047 after 3 days in mannitol medium rep3 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.8 95.7 GSM71152 Barke stress and unstress replicate 3 GSE3170 Barley single feature polymorphisms and drought stress gene expression
3.8 95.7 GSM261045 after 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis

Inter-species module comparison

A co-expression module including the grape gene, 1606458_at, orthologous to the query gene, Contig5492_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.55 77.3 1606458_at At3g44890 hypothetical protein LOC100251697 - 4e-11 At3g44890 RPL9 (RIBOSOMAL PROTEIN L9) O.I. H.G. S.X.
0.83 94.6 1614138_at At3g44890 hypothetical protein LOC100254839 - 3e-14 At1g68590 plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative O.I. H.G. S.X.
0.83 94.6 1616390_at At3g44890 hypothetical protein LOC100248042 - 1e-41 At3g13120 30S ribosomal protein S10, chloroplast, putative O.I. H.G. S.X.
0.80 93.6 1608691_at At3g44890 hypothetical protein LOC100248623 - 6e-27 At1g78630 emb1473 (embryo defective 1473) O.I. H.G. S.X.
0.80 93.6 1621569_at At3g44890 hypothetical protein LOC100257626 - 4e-7 At3g27850 RPL12-C (ribosomal protein l12-c) O.I. H.G. S.X.
0.67 87.9 1620854_at At3g44890 hypothetical protein LOC100258321 - 7e-12 At1g29070 ribosomal protein L34 family protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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