Co-expression analysis

Gene ID	Contig5492_at
Gene name
Homology with Arabidopsis	Similar to At3g44890: RPL9 (RIBOSOMAL PROTEIN L9) (HF=1e-7)
Module size	6 genes
NF	0.79
%ile	96.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.98	Contig5492_at	Contig5492	-	-	1e-7	At3g44890	RPL9 (RIBOSOMAL PROTEIN L9)	O.I.	H.G.	S.X.	Please select
0.83	94.0	0.98	Contig5260_s_at	Contig5260	-	-	0	At2g29630	THIC (ThiaminC)	O.I.	H.G.	S.X.	Please select
0.80	92.5	0.98	Contig7652_at	Contig7652	-	-	3e-3	At3g56660	BZIP49 (BASIC REGION/LEUCINE ZIPPER MOTIF PROTEIN 49)	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.96	Contig5301_at	Contig5301	-	-	1e-43	At4g38130	HD1 (HISTONE DEACETYLASE 1)	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.98	Contig3018_at	Contig3018	-	-	2e+0	At4g14630	GLP9 (GERMIN-LIKE PROTEIN 9)	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.98	Contig20916_at	Contig20916	-	-	3e-1	At5g66160	JR700	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.4	98.1	GSM146368	Maythorpe Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.3	97.4	GSM146362	Golden Promise Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.1	97.3	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.1	97.3	GSM146367	Maythorpe Root Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.8	97.0	GSM71139	OWB-D stress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression
4.6	96.8	GSM146359	Golden Promise Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.3	96.4	GSM146365	Maythorpe Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.1	96.2	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.8	95.7	GSM71152	Barke stress and unstress replicate 3	GSE3170	Barley single feature polymorphisms and drought stress gene expression
3.8	95.7	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis

Inter-species module comparison

A co-expression module including the wheat gene, Ta.14183.1.S1_at, orthologous to the query gene, Contig5492_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	Ta.14183.1.S1_at	At3g44890	hypothetical LOC543077	-	2e-3	At3g44890	RPL9 (RIBOSOMAL PROTEIN L9)	O.I.	H.G.	S.X.	Please select
0.83	93.4	Ta.14225.1.S1_x_at	At3g44890	-	-	1e-1	At5g54600	50S ribosomal protein L24, chloroplast (CL24)	O.I.	H.G.	S.X.	Please select
0.80	92.2	TaAffx.128618.1.S1_at	At3g44890	-	-	6e-1	At3g17730	anac057 (Arabidopsis NAC domain containing protein 57)	O.I.	H.G.	S.X.	Please select
0.73	89.1	Ta.14225.3.S1_at	At3g44890	-	-	7e-2	At5g54600	50S ribosomal protein L24, chloroplast (CL24)	O.I.	H.G.	S.X.	Please select
0.73	89.1	Ta.24301.1.A1_s_at	At3g44890	-	-	4e+0	At5g59580	UGT76E1 (UDP-GLUCOSYL TRANSFERASE 76E1)	O.I.	H.G.	S.X.	Please select
0.44	64.5	Ta.9666.3.S1_at	At3g44890	-	-	3e-1	At1g12665	-	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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