Co-expression analysis

Gene ID	Contig5489_at
Gene name
Homology with Arabidopsis	Similar to At2g13560: malate oxidoreductase, putative (HF=7e-64)
Module size	6 genes
NF	0.35
%ile	47.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	66.9	0.94	Contig5489_at	Contig5489	-	-	7e-64	At2g13560	malate oxidoreductase, putative	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.95	Contig865_3_s_at	Contig865_3	-	-			-	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.95	HU11D20u_s_at	HU11D20u	-	-	9e-1	At2g45060	-	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.94	Contig11338_at	Contig11338	-	-	2e-4	At5g58490	cinnamoyl-CoA reductase family	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.94	Contig9853_at	Contig9853	-	-	3e+0	At5g12140	ATCYS1 (A. thaliana cystatin-1)	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.95	Contig10012_at	Contig10012	-	-	6e-8	At5g24630	BIN4 (brassinosteroid-insensitive4)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
30.8	99.9	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
22.6	99.8	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
14.2	99.5	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
8.8	98.9	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.1	97.3	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.1	96.2	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.1	94.1	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.0	93.8	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.5	91.9	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.5	91.9	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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