Co-expression analysis

Gene ID	Contig5466_at
Gene name
Homology with Arabidopsis	Similar to At5g60460: sec61beta family protein (HF=3e-4)
Module size	6 genes
NF	0.33
%ile	43.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	75.8	0.95	Contig5466_at	Contig5466	-	-	3e-4	At5g60460	sec61beta family protein	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.95	Contig1159_s_at	Contig1159	-	-	1e-4	At1g62540	FMO GS-OX2 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 2)	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.96	Contig9727_at	Contig9727	-	-	5e-1	At5g25030	ATP binding / nucleotide binding / phenylalanine-tRNA ligase	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.96	Contig4935_at	Contig4935	-	-	1e-4	At5g11650	hydrolase, alpha/beta fold family protein	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.96	Contig10043_at	Contig10043	-	-	8e-38	At5g13280	AK-LYS1 (ASPARTATE KINASE 1)	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.95	Contig423_at	Contig423	-	-	5e-5	At3g14600	60S ribosomal protein L18A (RPL18aC)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.1	99.2	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
10.2	99.1	GSM419982	Seed_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
10.2	99.1	GSM440976	Control seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
8.8	98.9	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.0	97.9	GSM440980	Stressed seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
5.8	97.8	GSM440979	Stressed seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
5.6	97.7	GSM440978	Stressed seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress
5.5	97.6	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.2	97.4	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.1	94.1	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage